Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025866_P001 | Maize | cytosol | 95.19 | 94.29 |
| EES17571 | Sorghum | cytosol | 94.23 | 94.23 |
| Zm00001d003014_P002 | Maize | cytosol | 94.23 | 93.33 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 92.31 | 93.2 |
| EES12524 | Sorghum | cytosol | 93.27 | 92.38 |
| Os05t0314100-02 | Rice | nucleus | 93.27 | 92.38 |
| Bra014389.1-P | Field mustard | cytosol | 92.31 | 91.43 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 92.31 | 90.57 |
| KRH60444 | Soybean | nucleus | 93.27 | 89.81 |
| KRH26192 | Soybean | cytosol | 75.96 | 89.77 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 90.38 | 89.52 |
| AT3G62840.1 | Thale cress | cytosol | 93.27 | 88.99 |
| AT2G47640.1 | Thale cress | cytosol | 93.27 | 88.99 |
| KRH34474 | Soybean | cytosol | 92.31 | 88.89 |
| KRG92316 | Soybean | cytosol | 82.69 | 87.76 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 89.42 | 86.92 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 89.42 | 86.92 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 89.42 | 86.92 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 92.31 | 83.48 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 98.08 | 80.31 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 93.27 | 78.23 |
| PGSC0003DMT400029670 | Potato | cytosol | 78.85 | 78.1 |
| Bra007706.1-P | Field mustard | cytosol | 93.27 | 77.6 |
| Solyc09g075130.2.1 | Tomato | nucleus | 78.85 | 75.23 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 90.38 | 70.68 |
| CDY01762 | Canola | cytosol | 68.27 | 70.3 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 91.35 | 57.93 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 92.31 | 56.47 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 |
| GO:GO:0030532 | EnsemblPlantsGene:GSMUA_Achr2G00230_001 | EnsemblPlants:GSMUA_Achr2P00230_001 | EnsemblPlants:GSMUA_Achr2T00230_001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| UniProt:M0S3W4 | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 |
| UniParc:UPI00029490E6 | SEG:seg | : | : | : | : |
Description
Probable small nuclear ribonucleoprotein Sm D2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00230_001]
Coordinates
chr2:+:874782..886478
Molecular Weight (calculated)
12062.9 Da
IEP (calculated)
10.586
GRAVY (calculated)
-0.634
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDETNAKKE EEEFNTGPLS VLMMSVKNNT QVLINCRNNK KLLGRVRAFD RHCNMVLENV REMWTEIPKT GKGKKKALPV NKDRFISKMF LRGDSVIIVL
101: RNPK
101: RNPK
001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK
101: IIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.