Factsheet for GSMUA_Achr11P22850_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00230_001	Banana	cytosol	78.23	93.27
VIT_01s0011g06020.t01	Wine grape	cytosol	76.61	92.23
Zm00001d025866_P001	Maize	cytosol	77.42	91.43
Zm00001d003014_P002	Maize	cytosol	77.42	91.43
EES12524	Sorghum	cytosol	77.42	91.43
Os05t0314100-02	Rice	nucleus	77.42	91.43
EES17571	Sorghum	cytosol	76.61	91.35
TraesCS5A01G529800.2	Wheat	cytosol	77.42	89.72
TraesCS4D01G354800.2	Wheat	cytosol	77.42	89.72
TraesCS4B01G361800.1	Wheat	cytosol	77.42	89.72
TraesCS3A01G517300.1	Wheat	nucleus	76.61	89.62
Bra014389.1-P	Field mustard	cytosol	75.81	89.52
KRH60444	Soybean	nucleus	77.42	88.89
TraesCS3D01G524800.1	Wheat	cytosol	75.0	88.57
KRH34474	Soybean	cytosol	76.61	87.96
KRG92316	Soybean	cytosol	69.35	87.76
KRH26192	Soybean	cytosol	62.1	87.5
AT2G47640.1	Thale cress	cytosol	76.61	87.16
AT3G62840.1	Thale cress	cytosol	76.61	87.16
TraesCS3B01G584900.1	Wheat	cytosol	76.61	82.61
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	80.65	78.74
PGSC0003DMT400029670	Potato	cytosol	65.32	77.14
Bra007706.1-P	Field mustard	cytosol	76.61	76.0
Solyc09g075130.2.1	Tomato	nucleus	66.13	75.23
HORVU4Hr1G086790.2	Barley	mitochondrion	76.61	71.43
CDY01762	Canola	cytosol	55.65	68.32
HORVU3Hr1G113110.1	Barley	mitochondrion	75.81	57.32
VIT_07s0005g00500.t01	Wine grape	nucleus, plastid	76.61	55.88

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030529
GO:GO:0030532	EnsemblPlantsGene:GSMUA_Achr11G22850_001	EnsemblPlants:GSMUA_Achr11P22850_001	EnsemblPlants:GSMUA_Achr11T22850_001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
UniProt:M0RUL5	PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	SignalP:SignalP-noTM
InterPro:Sm_D2	UniParc:UPI0002956B5D	:	:	:	:

Description

Probable small nuclear ribonucleoprotein Sm D2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G22850_001]

Coordinates

chr11:-:22997050..23000873

Molecular Weight (calculated)

14280.9 Da

IEP (calculated)

10.689

GRAVY (calculated)

-0.251

Length

124 amino acids

Sequence
(BLAST)

001: MFCGSFAGFF CCLTLYRMSV MQGIQKAKKE EEEFNTGPLS VLMMSVKNNT QVLINCRNNK KLLGRVRAFD RHCNMVLENV REMWTEVPKT GKGKKKALPV
101: NKDRFISKMF LRGDSVIIVL RNPK

Best Arabidopsis Sequence Match ( AT3G62840.1 )
(BLAST)

001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.