Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G62840.1 | Thale cress | cytosol | 85.6 | 98.17 |
| AT2G47640.1 | Thale cress | cytosol | 85.6 | 98.17 |
| Bra014389.1-P | Field mustard | cytosol | 82.4 | 98.1 |
| KRH60444 | Soybean | nucleus | 82.4 | 95.37 |
| KRG92316 | Soybean | cytosol | 74.4 | 94.9 |
| KRH34474 | Soybean | cytosol | 81.6 | 94.44 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 77.6 | 93.27 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 76.8 | 93.2 |
| EES17571 | Sorghum | cytosol | 76.8 | 92.31 |
| Os05t0314100-02 | Rice | nucleus | 76.8 | 91.43 |
| Zm00001d003014_P002 | Maize | cytosol | 76.0 | 90.48 |
| KRH26192 | Soybean | cytosol | 63.2 | 89.77 |
| Zm00001d025866_P001 | Maize | cytosol | 75.2 | 89.52 |
| EES12524 | Sorghum | cytosol | 75.2 | 89.52 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 74.4 | 87.74 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 73.6 | 87.62 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 74.4 | 86.92 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 74.4 | 86.92 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 74.4 | 86.92 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 76.0 | 82.61 |
| Solyc09g075130.2.1 | Tomato | nucleus | 72.0 | 82.57 |
| CDX76666 | Canola | extracellular | 86.4 | 82.44 |
| PGSC0003DMT400029670 | Potato | cytosol | 68.8 | 81.9 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 80.0 | 78.74 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 76.0 | 76.61 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 75.2 | 70.68 |
| Os01t0967000-00 | Rice | endoplasmic reticulum, extracellular | 57.6 | 69.9 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 75.2 | 57.32 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 75.2 | 55.29 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra007706 | EnsemblPlants:Bra007706.1 | EnsemblPlants:Bra007706.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 | GO:GO:0030532 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| UniProt:M4CU12 | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 |
| UniParc:UPI0002542B3A | : | : | : | : | : |
Description
AT3G62840 (E=2e-052) | FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.4); Has 535 Blast hits to 535 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Coordinates
chrA09:-:30472358..30473266
Molecular Weight (calculated)
14510.0 Da
IEP (calculated)
11.085
GRAVY (calculated)
-0.431
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPMEEDTN RLATLASRYT VLRIVFLGKT EEEEFNTGPL SVLMMSVKNN TQVLINCRNN RKLLGRVRAF DRHCNMVLEN VREMWTEVPK TGKGKKKALP
101: VNRDRFISKM FLRGDSVIIV LRNPK
101: VNRDRFISKM FLRGDSVIIV LRNPK
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.