Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0314100-02 | Rice | nucleus | 71.84 | 70.48 |
| Bra014389.1-P | Field mustard | cytosol | 69.9 | 68.57 |
| AT2G47640.1 | Thale cress | cytosol | 69.9 | 66.06 |
| AT3G62840.1 | Thale cress | cytosol | 69.9 | 66.06 |
| Bra007706.1-P | Field mustard | cytosol | 69.9 | 57.6 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | UniProt:A0A0P0VDD6 | ProteinID:BAS76390.1 | GO:GO:0000387 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005682 | GO:GO:0005685 | GO:GO:0005686 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016705 | GO:GO:0020037 |
| GO:GO:0030532 | GO:GO:0046540 | GO:GO:0055114 | GO:GO:0071011 | GO:GO:0071013 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | EnsemblPlantsGene:Os01g0967000 | EnsemblPlants:Os01t0967000-00 | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 |
| SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI000393C169 | : | : | : |
Description
Similar to Small nuclear ribonucleoprotein-like protein. (Os01t0967000-00)
Coordinates
chr1:-:42638856..42639926
Molecular Weight (calculated)
11722.8 Da
IEP (calculated)
10.677
GRAVY (calculated)
-0.018
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MVCLGKNSEN ICLMYIVWVR PQIFVAASSA VLINCQNNKK LLGRVRAFDS HCNMVLENVR EMWTEVPKTG KGKKKALPVN KDRFISKMFL RGDSVIIVLK
101: NPK
101: NPK
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.