Factsheet for Os05t0314100-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003014_P002	Maize	cytosol	96.19	96.19
Zm00001d025866_P001	Maize	cytosol	95.24	95.24
EES12524	Sorghum	cytosol	95.24	95.24
TraesCS3A01G517300.1	Wheat	nucleus	95.24	94.34
TraesCS3D01G524800.1	Wheat	cytosol	94.29	94.29
GSMUA_Achr2P00230_001	Banana	cytosol	92.38	93.27
Bra014389.1-P	Field mustard	cytosol	92.38	92.38
VIT_01s0011g06020.t01	Wine grape	cytosol	90.48	92.23
KRH60444	Soybean	nucleus	92.38	89.81
KRG92316	Soybean	cytosol	83.81	89.8
TraesCS5A01G529800.2	Wheat	cytosol	91.43	89.72
TraesCS4D01G354800.2	Wheat	cytosol	91.43	89.72
TraesCS4B01G361800.1	Wheat	cytosol	91.43	89.72
AT3G62840.1	Thale cress	cytosol	92.38	88.99
AT2G47640.1	Thale cress	cytosol	92.38	88.99
KRH34474	Soybean	cytosol	91.43	88.89
KRH26192	Soybean	cytosol	74.29	88.64
TraesCS3B01G584900.1	Wheat	cytosol	95.24	86.96
PGSC0003DMT400029670	Potato	cytosol	80.95	80.95
Solyc09g075130.2.1	Tomato	nucleus	80.95	77.98
GSMUA_Achr11P...	Banana	extracellular, golgi	91.43	77.42
Bra007706.1-P	Field mustard	cytosol	91.43	76.8
HORVU4Hr1G086790.2	Barley	mitochondrion	95.24	75.19
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	90.48	74.8
Os01t0967000-00	Rice	endoplasmic reticulum, extracellular	70.48	71.84
CDY01762	Canola	cytosol	66.67	69.31
HORVU3Hr1G113110.1	Barley	mitochondrion	95.24	60.98
VIT_07s0005g00500.t01	Wine grape	nucleus, plastid	92.38	57.06

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	EntrezGene:4338385	ProteinID:AAV32147.1	EMBL:AK121220	EMBL:AK241054
ProteinID:BAF17082.2	ProteinID:BAS93312.1	ProteinID:EEE63211.1	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030532
GO:GO:0046540	GO:GO:0071011	GO:GO:0071013	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	EnsemblPlantsGene:Os05g0314100
EnsemblPlants:Os05t0314100-02	PFAM:PF01423	PANTHER:PTHR12777	UniProt:Q5WMV0	SMART:SM00651	SUPFAM:SSF50182
InterPro:Sm_D2	UniParc:UPI00004508EF	RefSeq:XP_015637507.1	SEG:seg	:	:

Description

Similar to Small nuclear ribonucleoprotein-like protein. (Os05t0314100-02);Similar to small nuclear ribonucleoprotein Sm D2. (Os05t0314100-03)

Coordinates

chr5:-:14449684..14452183

Molecular Weight (calculated)

12048.9 Da

IEP (calculated)

10.718

GRAVY (calculated)

-0.558

Length

105 amino acids

Sequence
(BLAST)

001: MAEEATQGKK EEEEFSTGPL SVLMMSVKNN TQVLINCRNN KKLLGRVRAF DRHCNMVLEN VREMWTEVPK TGKGKKKALP VNKDRFISKM FLRGDSVIIV
101: LRNPK

Best Arabidopsis Sequence Match ( AT3G62840.1 )
(BLAST)

001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.