Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029670 | Potato | cytosol | 72.28 | 69.52 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 70.3 | 68.27 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 69.31 | 67.96 |
| EES17571 | Sorghum | cytosol | 69.31 | 67.31 |
| Solyc09g075130.2.1 | Tomato | nucleus | 72.28 | 66.97 |
| Os05t0314100-02 | Rice | nucleus | 69.31 | 66.67 |
| EES12524 | Sorghum | cytosol | 68.32 | 65.71 |
| Zm00001d003014_P002 | Maize | cytosol | 68.32 | 65.71 |
| Zm00001d025866_P001 | Maize | cytosol | 67.33 | 64.76 |
| KRG92316 | Soybean | cytosol | 62.38 | 64.29 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 66.34 | 63.21 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 65.35 | 62.86 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 65.35 | 61.68 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 65.35 | 61.68 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 65.35 | 61.68 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 66.34 | 58.26 |
| CDX76666 | Canola | extracellular | 75.25 | 58.02 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 70.3 | 55.91 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 68.32 | 55.65 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 66.34 | 50.38 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 66.34 | 40.85 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 68.32 | 40.59 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | GO:A0A078EKS6 | EnsemblPlants:CDY01762 | ProteinID:CDY01762 | ProteinID:CDY01762.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030532 | EnsemblPlantsGene:GSBRNA2T00112891001 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | PFAM:PF01423 | PANTHER:PTHR12777 | SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI0004EF24AB |
Description
BnaC06g28020D
Coordinates
chrLK031929:-:102616..104500
Molecular Weight (calculated)
11747.3 Da
IEP (calculated)
8.672
GRAVY (calculated)
-0.695
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDLNQEKT EEEEFNTGPL SVLMMSVKND TQVLINCCNN RKLIGCVRDF ERRCNMVLEN IRDMRIEVPK NGKGKKKALP VNRDRFISKM FLATNSHESQ
101: V
101: V
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.