Factsheet for VIT_07s0005g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g06020.t01	Wine grape	cytosol	57.65	95.15
Os05t0314100-02	Rice	nucleus	57.06	92.38
GSMUA_Achr2P00230_001	Banana	cytosol	56.47	92.31
Zm00001d003014_P002	Maize	cytosol	56.47	91.43
Zm00001d025866_P001	Maize	cytosol	55.88	90.48
EES12524	Sorghum	cytosol	55.88	90.48
Bra014389.1-P	Field mustard	cytosol	55.88	90.48
EES17571	Sorghum	cytosol	55.29	90.38
TraesCS3A01G517300.1	Wheat	nucleus	55.88	89.62
TraesCS3D01G524800.1	Wheat	cytosol	54.71	88.57
AT2G47640.1	Thale cress	cytosol	55.29	86.24
AT3G62840.1	Thale cress	cytosol	55.29	86.24
TraesCS4B01G361800.1	Wheat	cytosol	54.12	85.98
TraesCS4D01G354800.2	Wheat	cytosol	54.12	85.98
TraesCS5A01G529800.2	Wheat	cytosol	54.12	85.98
TraesCS3B01G584900.1	Wheat	cytosol	56.47	83.48
PGSC0003DMT400029670	Potato	cytosol	49.41	80.0
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	57.65	77.17
Solyc09g075130.2.1	Tomato	nucleus	49.41	77.06
GSMUA_Achr11P...	Banana	extracellular, golgi	55.88	76.61
Bra007706.1-P	Field mustard	cytosol	55.29	75.2
HORVU4Hr1G086790.2	Barley	mitochondrion	55.88	71.43
CDY01762	Canola	cytosol	40.59	68.32
HORVU3Hr1G113110.1	Barley	mitochondrion	55.88	57.93

Protein Annotations

EntrezGene:100258827	wikigene:100258827	MapMan:16.4.2.3	Gene3D:2.30.30.100	ProteinID:CBI36862	ProteinID:CBI36862.3
UniProt:D7U296	EMBL:FN596502	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	GO:GO:0030532
GO:GO:0046540	GO:GO:0071011	GO:GO:0071013	EntrezGene:LOC100258827	wikigene:LOC100258827	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_D2
UniParc:UPI00015CAD20	ArrayExpress:VIT_07s0005g00500	EnsemblPlantsGene:VIT_07s0005g00500	EnsemblPlants:VIT_07s0005g00500.t01	unigene:Vvi.8637	RefSeq:XP_002268945
RefSeq:XP_002268945.1	RefSeq:XP_002268945.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:3205347..3209147

Molecular Weight (calculated)

19349.5 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.691

Length

170 amino acids

Sequence
(BLAST)

001: MSPAKHALQQ TRPDPARHDI TNTSLSHCPK RSYLRIFPFS TEKKSNPSAL CSISLAREND PKLRLQMEDD ATAKNEGEEF STGPLSVLMM SVKNNTQVLI
101: NCRNNKKLLG RVRAFDRHCN MVLENVREMW TEVPKTGKGK KKANPVNKDR FISKMFLRGD SVIIVLRNPK

Best Arabidopsis Sequence Match ( AT3G62840.2 )
(BLAST)

001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.