Factsheet for Solyc09g075130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029670	Potato	cytosol	96.33	100.0
KRG92316	Soybean	cytosol	76.15	84.69
AT3G62840.1	Thale cress	cytosol	82.57	82.57
AT2G47640.1	Thale cress	cytosol	82.57	82.57
VIT_01s0011g06020.t01	Wine grape	cytosol	77.98	82.52
Bra014389.1-P	Field mustard	cytosol	78.9	81.9
Os05t0314100-02	Rice	nucleus	77.98	80.95
EES17571	Sorghum	cytosol	75.23	78.85
GSMUA_Achr2P00230_001	Banana	cytosol	75.23	78.85
EES12524	Sorghum	cytosol	75.23	78.1
Zm00001d003014_P002	Maize	cytosol	75.23	78.1
Zm00001d025866_P001	Maize	cytosol	74.31	77.14
TraesCS3A01G517300.1	Wheat	nucleus	74.31	76.42
TraesCS3D01G524800.1	Wheat	cytosol	73.39	76.19
TraesCS4B01G361800.1	Wheat	cytosol	73.39	74.77
TraesCS4D01G354800.2	Wheat	cytosol	73.39	74.77
TraesCS5A01G529800.2	Wheat	cytosol	73.39	74.77
CDY01762	Canola	cytosol	66.97	72.28
Bra007706.1-P	Field mustard	cytosol	82.57	72.0
TraesCS3B01G584900.1	Wheat	cytosol	75.23	71.3
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	77.98	66.93
GSMUA_Achr11P...	Banana	extracellular, golgi	75.23	66.13
HORVU4Hr1G086790.2	Barley	mitochondrion	76.15	62.41
HORVU3Hr1G113110.1	Barley	mitochondrion	75.23	50.0
VIT_07s0005g00500.t01	Wine grape	nucleus, plastid	77.06	49.41

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	GO:GO:0030532
GO:GO:0046540	GO:GO:0071011	GO:GO:0071013	UniProt:K4CV90	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_D2	EnsemblPlantsGene:Solyc09g075130.2
EnsemblPlants:Solyc09g075130.2.1	UniParc:UPI000276B961	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:66931229..66934798

Molecular Weight (calculated)

12561.5 Da

IEP (calculated)

10.699

GRAVY (calculated)

-0.632

Length

109 amino acids

Sequence
(BLAST)

001: MSRPMEEDAP QGKNEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KAVAVNKDRF ISKMFLRGDS
101: VIIVLRNPK

Best Arabidopsis Sequence Match ( AT3G62840.1 )
(BLAST)

001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.