Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G62840.1 | Thale cress | cytosol | 100.0 | 100.0 |
| KRH60444 | Soybean | nucleus | 93.58 | 94.44 |
| KRG92316 | Soybean | cytosol | 84.4 | 93.88 |
| KRH34474 | Soybean | cytosol | 92.66 | 93.52 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 88.99 | 93.27 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 88.07 | 93.2 |
| Os05t0314100-02 | Rice | nucleus | 88.99 | 92.38 |
| EES17571 | Sorghum | cytosol | 88.07 | 92.31 |
| Zm00001d003014_P002 | Maize | cytosol | 87.16 | 90.48 |
| KRH26192 | Soybean | cytosol | 72.48 | 89.77 |
| Zm00001d025866_P001 | Maize | cytosol | 86.24 | 89.52 |
| EES12524 | Sorghum | cytosol | 86.24 | 89.52 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 85.32 | 87.74 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 84.4 | 87.62 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 85.32 | 86.92 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 85.32 | 86.92 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 85.32 | 86.92 |
| Bra007706.1-P | Field mustard | cytosol | 98.17 | 85.6 |
| PGSC0003DMT400029670 | Potato | cytosol | 79.82 | 82.86 |
| Solyc09g075130.2.1 | Tomato | nucleus | 82.57 | 82.57 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 86.24 | 81.74 |
| CDX76666 | Canola | extracellular | 98.17 | 81.68 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 90.83 | 77.95 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 87.16 | 76.61 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 86.24 | 70.68 |
| Os01t0967000-00 | Rice | endoplasmic reticulum, extracellular | 66.06 | 69.9 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 86.24 | 57.32 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 86.24 | 55.29 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | EntrezGene:819377 | EntrezGene:825459 | UniProt:A0A178VZZ5 | ProteinID:AAC63620.2 |
| ProteinID:AAM14847.1 | ProteinID:AEC10867.1 | ProteinID:AEC10868.1 | ProteinID:AEC10869.1 | ProteinID:AEC10870.1 | ProteinID:AEE80400.1 |
| ProteinID:AEE80401.1 | EMBL:AK227792 | ArrayExpress:AT2G47640 | EnsemblPlantsGene:AT2G47640 | RefSeq:AT2G47640 | TAIR:AT2G47640 |
| RefSeq:AT2G47640-TAIR-G | EnsemblPlants:AT2G47640.1 | TAIR:AT2G47640.1 | EMBL:BT004783 | ProteinID:CAB83134.1 | GO:GO:0000387 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005682 |
| GO:GO:0005685 | GO:GO:0005686 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019013 |
| GO:GO:0030529 | GO:GO:0030532 | GO:GO:0046540 | GO:GO:0071011 | GO:GO:0071013 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | RefSeq:NP_001078076.1 | RefSeq:NP_001078331.1 | RefSeq:NP_566107.1 | RefSeq:NP_567134.3 | RefSeq:NP_850477.1 |
| RefSeq:NP_973710.1 | ProteinID:OAP10825.1 | ProteinID:OAP10826.1 | PFAM:PF01423 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12777 |
| UniProt:Q8RUH0 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI00000A59E1 | : |
Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
Coordinates
chr2:+:19537174..19538820
Molecular Weight (calculated)
12635.5 Da
IEP (calculated)
10.699
GRAVY (calculated)
-0.682
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.