Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60444 | Soybean | nucleus | 97.96 | 88.89 |
| KRH34474 | Soybean | cytosol | 97.96 | 88.89 |
| Bra014389.1-P | Field mustard | cytosol | 90.82 | 84.76 |
| AT3G62840.1 | Thale cress | cytosol | 93.88 | 84.4 |
| AT2G47640.1 | Thale cress | cytosol | 93.88 | 84.4 |
| Os05t0314100-02 | Rice | nucleus | 89.8 | 83.81 |
| KRH26192 | Soybean | cytosol | 74.49 | 82.95 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 87.76 | 82.69 |
| Zm00001d003014_P002 | Maize | cytosol | 87.76 | 81.9 |
| EES17571 | Sorghum | cytosol | 86.73 | 81.73 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 87.76 | 81.13 |
| Zm00001d025866_P001 | Maize | cytosol | 86.73 | 80.95 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 86.73 | 80.95 |
| EES12524 | Sorghum | cytosol | 86.73 | 80.95 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 85.71 | 78.5 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 85.71 | 78.5 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 85.71 | 78.5 |
| Solyc09g075130.2.1 | Tomato | nucleus | 84.69 | 76.15 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 88.78 | 75.65 |
| PGSC0003DMT400029670 | Potato | cytosol | 80.61 | 75.24 |
| Bra007706.1-P | Field mustard | cytosol | 94.9 | 74.4 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 90.82 | 70.08 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 87.76 | 69.35 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 87.76 | 64.66 |
| CDY01762 | Canola | cytosol | 64.29 | 62.38 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 88.78 | 53.05 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | EMBL:ACUP02012739 | EnsemblPlantsGene:GLYMA_20G204200 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0030529 | GO:GO:0030532 | UniProt:I1NI35 | EnsemblPlants:KRG92316 | ProteinID:KRG92316 |
| ProteinID:KRG92316.1 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 |
| SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI00023DBC12 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr20:+:44111075..44113854
Molecular Weight (calculated)
11250.8 Da
IEP (calculated)
10.424
GRAVY (calculated)
-0.660
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRPMEEDAA GKNEEEEFNT GPLSVLMMSV KNNTQLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK AQPVNKDRFI SKMFLRGDSV IIVLRNPK
001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK
101: IIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.