CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12524	Sorghum	cytosol	96.15	95.24
GSMUA_Achr2P00230_001	Banana	cytosol	94.23	94.23
VIT_01s0011g06020.t01	Wine grape	cytosol	90.38	91.26
Bra014389.1-P	Field mustard	cytosol	91.35	90.48
KRH60444	Soybean	nucleus	92.31	88.89
AT3G62840.1	Thale cress	cytosol	92.31	88.07
AT2G47640.1	Thale cress	cytosol	92.31	88.07
KRH34474	Soybean	cytosol	91.35	87.96
KRH26192	Soybean	cytosol	74.04	87.5
KRG92316	Soybean	cytosol	81.73	86.73
PGSC0003DMT400029670	Potato	cytosol	78.85	78.1
Bra007706.1-P	Field mustard	cytosol	92.31	76.8
GSMUA_Achr11P...	Banana	extracellular, golgi	91.35	76.61
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	92.31	75.59
Solyc09g075130.2.1	Tomato	nucleus	78.85	75.23
CDY01762	Canola	cytosol	67.31	69.31
VIT_07s0005g00500.t01	Wine grape	nucleus, plastid	90.38	55.29

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	EntrezGene:8068671	ProteinID:ACE86405.1	UniProt:B3VTC7	EnsemblPlants:EES17571
ProteinID:EES17571	ProteinID:EES17571.1	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0019013	GO:GO:0030529
GO:GO:0030532	GO:GO:0046540	GO:GO:0071011	GO:GO:0071013	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	EnsemblPlantsGene:SORBI_3009G012700	SUPFAM:SSF50182	unigene:Sbi.8253
InterPro:Sm_D2	UniParc:UPI00017878A5	RefSeq:XP_002439141.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:1110964..1113351

Molecular Weight (calculated)

11991.8 Da

IEP (calculated)

10.641

GRAVY (calculated)

-0.533

Length

104 amino acids

Sequence
(BLAST)

001: MAEETNVKKE EEEFSTGPLS VLMMSVKNNT QVLINCRNNK KLLGRVRAFD RHCNMVLENV REMWTEVPKT GKGKKKALPV NKDRFISKMF LRGDSVIIVL
101: RNPN

Best Arabidopsis Sequence Match ( AT3G62840.2 )
(BLAST)

001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.