Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P00230_001 | Banana | cytosol | 93.2 | 92.31 |
| KRH60444 | Soybean | nucleus | 96.12 | 91.67 |
| Bra014389.1-P | Field mustard | cytosol | 93.2 | 91.43 |
| KRH34474 | Soybean | cytosol | 95.15 | 90.74 |
| Os05t0314100-02 | Rice | nucleus | 92.23 | 90.48 |
| EES17571 | Sorghum | cytosol | 91.26 | 90.38 |
| Zm00001d003014_P002 | Maize | cytosol | 91.26 | 89.52 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 91.26 | 88.68 |
| Zm00001d025866_P001 | Maize | cytosol | 90.29 | 88.57 |
| EES12524 | Sorghum | cytosol | 90.29 | 88.57 |
| AT2G47640.1 | Thale cress | cytosol | 93.2 | 88.07 |
| AT3G62840.1 | Thale cress | cytosol | 93.2 | 88.07 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 89.32 | 87.62 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 88.35 | 85.05 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 88.35 | 85.05 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 88.35 | 85.05 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 91.26 | 81.74 |
| PGSC0003DMT400029670 | Potato | cytosol | 82.52 | 80.95 |
| Solyc09g075130.2.1 | Tomato | nucleus | 82.52 | 77.98 |
| Bra007706.1-P | Field mustard | cytosol | 93.2 | 76.8 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 92.23 | 76.61 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 93.2 | 75.59 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 90.29 | 69.92 |
| CDY01762 | Canola | cytosol | 67.96 | 69.31 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 95.15 | 57.65 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 90.29 | 56.71 |
Protein Annotations
| EntrezGene:100242311 | wikigene:100242311 | MapMan:16.4.2.3 | Gene3D:2.30.30.100 | ProteinID:CBI26806 | ProteinID:CBI26806.3 |
| UniProt:D7T8I5 | EMBL:FN595752 | GO:GO:0000387 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005682 | GO:GO:0005685 | GO:GO:0005686 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030529 | GO:GO:0030532 |
| GO:GO:0046540 | GO:GO:0071011 | GO:GO:0071013 | EntrezGene:LOC100242311 | wikigene:LOC100242311 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | PFAM:PF01423 | PANTHER:PTHR12777 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 |
| TIGR:TC54635 | UniParc:UPI0001BE2D92 | ArrayExpress:VIT_01s0011g06020 | EnsemblPlantsGene:VIT_01s0011g06020 | EnsemblPlants:VIT_01s0011g06020.t01 | RefSeq:XP_002285043 |
| RefSeq:XP_002285043.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5781929..5784954
Molecular Weight (calculated)
11893.6 Da
IEP (calculated)
10.492
GRAVY (calculated)
-0.677
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDSAKNEE EDFNTGPLSV LMMSVKNNTQ VLINCRNNKK LLGRVRAFDR HCNMVLENVR EMWTEVPKTG KGKKKANPVN KDRFISKMFL RGDSVIIVLR
101: NPK
101: NPK
001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK
101: IIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.