Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G524800.1 | Wheat | cytosol | 97.17 | 98.1 |
| Os05t0314100-02 | Rice | nucleus | 94.34 | 95.24 |
| Zm00001d003014_P002 | Maize | cytosol | 93.4 | 94.29 |
| Zm00001d025866_P001 | Maize | cytosol | 92.45 | 93.33 |
| EES12524 | Sorghum | cytosol | 92.45 | 93.33 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 90.57 | 92.31 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 100.0 | 92.17 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 88.68 | 91.26 |
| Bra014389.1-P | Field mustard | cytosol | 87.74 | 88.57 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 88.68 | 87.85 |
| KRG92316 | Soybean | cytosol | 81.13 | 87.76 |
| KRH34474 | Soybean | cytosol | 88.68 | 87.04 |
| KRH60444 | Soybean | nucleus | 88.68 | 87.04 |
| KRH26192 | Soybean | cytosol | 71.7 | 86.36 |
| AT2G47640.1 | Thale cress | cytosol | 87.74 | 85.32 |
| AT3G62840.1 | Thale cress | cytosol | 87.74 | 85.32 |
| PGSC0003DMT400029670 | Potato | cytosol | 76.42 | 77.14 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 89.62 | 76.61 |
| Bra007706.1-P | Field mustard | cytosol | 87.74 | 74.4 |
| Solyc09g075130.2.1 | Tomato | nucleus | 76.42 | 74.31 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 88.68 | 74.02 |
| CDY01762 | Canola | cytosol | 63.21 | 66.34 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 97.17 | 62.8 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 89.62 | 55.88 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G517300.1 | EnsemblPlantsGene:TraesCS3A01G517300 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0030532 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Sm_D2 | PANTHER:PTHR12777 | PFAM:PF01423 |
| SEG:seg | SMART:SM00651 | SUPFAM:SSF50182 | TIGR:cd01720 | MapMan:16.4.2.3 | : |
Description
No Description!
Coordinates
chr3A:-:734280584..734282563
Molecular Weight (calculated)
12085.9 Da
IEP (calculated)
10.718
GRAVY (calculated)
-0.477
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAAANAK KEEEEFSTGP LSLLLMSVKN NTQVLINCRN NKKLLGRVRA FDRHCNMVLE NVREMWTEVP KTGKGKKKAL PVNKDRFISK MFLRGDSVII
101: VLRNPK
101: VLRNPK
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.