Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P00230_001 | Banana | cytosol | 89.77 | 75.96 |
| KRH60444 | Soybean | nucleus | 93.18 | 75.93 |
| KRH34474 | Soybean | cytosol | 93.18 | 75.93 |
| Bra014389.1-P | Field mustard | cytosol | 89.77 | 75.24 |
| KRG92316 | Soybean | cytosol | 82.95 | 74.49 |
| Os05t0314100-02 | Rice | nucleus | 88.64 | 74.29 |
| EES17571 | Sorghum | cytosol | 87.5 | 74.04 |
| Zm00001d025866_P001 | Maize | cytosol | 87.5 | 73.33 |
| Zm00001d003014_P002 | Maize | cytosol | 87.5 | 73.33 |
| AT3G62840.1 | Thale cress | cytosol | 89.77 | 72.48 |
| AT2G47640.1 | Thale cress | cytosol | 89.77 | 72.48 |
| EES12524 | Sorghum | cytosol | 86.36 | 72.38 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 86.36 | 72.38 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 86.36 | 71.7 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 84.09 | 69.16 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 84.09 | 69.16 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 84.09 | 69.16 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 86.36 | 66.09 |
| Bra007706.1-P | Field mustard | cytosol | 89.77 | 63.2 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 89.77 | 62.2 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 87.5 | 62.1 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 86.36 | 57.14 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 86.36 | 46.34 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | EMBL:ACUP02007591 | EnsemblPlantsGene:GLYMA_12G158300 | GO:GO:0000387 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005682 | GO:GO:0005685 | GO:GO:0005686 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030529 | GO:GO:0030532 | GO:GO:0046540 | GO:GO:0071011 | GO:GO:0071013 | UniProt:K7LUT6 |
| EnsemblPlants:KRH26192 | ProteinID:KRH26192 | ProteinID:KRH26192.1 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PFAM:PF01423 |
| PANTHER:PTHR12777 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 | UniParc:UPI000295AF5B | SEG:seg |
Description
hypothetical protein
Coordinates
chr12:-:26631231..26632037
Molecular Weight (calculated)
10434.6 Da
IEP (calculated)
5.176
GRAVY (calculated)
-0.547
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEDNEEEEF NTEPLFVLMM SVKNNTQVLI NCQNNKKLLG RVRAFDRNCN MVLENVREIW TEPVNKDRFI SKMFLRGDSV TIVLRNPK
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.