Factsheet for GSMUA_Achr11P16370_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00230_001	Banana	cytosol	80.31	98.08
VIT_01s0011g06020.t01	Wine grape	cytosol	75.59	93.2
KRH60444	Soybean	nucleus	78.74	92.59
Zm00001d025866_P001	Maize	cytosol	76.38	92.38
EES17571	Sorghum	cytosol	75.59	92.31
KRH34474	Soybean	cytosol	77.95	91.67
Zm00001d003014_P002	Maize	cytosol	75.59	91.43
Bra014389.1-P	Field mustard	cytosol	75.59	91.43
AT2G47640.1	Thale cress	cytosol	77.95	90.83
AT3G62840.1	Thale cress	cytosol	77.95	90.83
KRG92316	Soybean	cytosol	70.08	90.82
EES12524	Sorghum	cytosol	74.8	90.48
Os05t0314100-02	Rice	nucleus	74.8	90.48
KRH26192	Soybean	cytosol	62.2	89.77
TraesCS3A01G517300.1	Wheat	nucleus	74.02	88.68
TraesCS3D01G524800.1	Wheat	cytosol	72.44	87.62
TraesCS4B01G361800.1	Wheat	cytosol	73.23	86.92
TraesCS4D01G354800.2	Wheat	cytosol	73.23	86.92
TraesCS5A01G529800.2	Wheat	cytosol	73.23	86.92
TraesCS3B01G584900.1	Wheat	cytosol	74.8	82.61
GSMUA_Achr11P...	Banana	extracellular, golgi	78.74	80.65
Bra007706.1-P	Field mustard	cytosol	78.74	80.0
PGSC0003DMT400029670	Potato	cytosol	64.57	78.1
Solyc09g075130.2.1	Tomato	nucleus	66.93	77.98
HORVU4Hr1G086790.2	Barley	mitochondrion	74.02	70.68
CDY01762	Canola	cytosol	55.91	70.3
HORVU3Hr1G113110.1	Barley	mitochondrion	74.8	57.93
VIT_07s0005g00500.t01	Wine grape	nucleus, plastid	77.17	57.65

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030529
GO:GO:0030532	EnsemblPlantsGene:GSMUA_Achr11G16370_001	EnsemblPlants:GSMUA_Achr11P16370_001	EnsemblPlants:GSMUA_Achr11T16370_001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
UniProt:M0RSR7	PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	SignalP:SignalP-noTM
InterPro:Sm_D2	UniParc:UPI0002962EDC	:	:	:	:

Description

LSM domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G16370_001]

Coordinates

chr11:+:18082275..18084789

Molecular Weight (calculated)

14668.1 Da

IEP (calculated)

10.585

GRAVY (calculated)

-0.346

Length

127 amino acids

Sequence
(BLAST)

001: MSINSASFFW FLISLPVSFC SRPMEDDTNA KKEEEEFNTG PLSVLMMSVK NNTQVLINCR NNKKLLGRVR AFDRHCNMVL ENVREMWTEI PKTGKGKKKA
101: LPVNKDRFIS KMFIRGDSVI IVLRNPK

Best Arabidopsis Sequence Match ( AT3G62840.2 )
(BLAST)

001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.