CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34474	Soybean	cytosol	98.15	98.15
KRG92316	Soybean	cytosol	88.89	97.96
VIT_01s0011g06020.t01	Wine grape	cytosol	91.67	96.12
Bra014389.1-P	Field mustard	cytosol	91.67	94.29
AT3G62840.1	Thale cress	cytosol	94.44	93.58
AT2G47640.1	Thale cress	cytosol	94.44	93.58
GSMUA_Achr2P00230_001	Banana	cytosol	89.81	93.27
KRH26192	Soybean	cytosol	75.93	93.18
Os05t0314100-02	Rice	nucleus	89.81	92.38
EES17571	Sorghum	cytosol	88.89	92.31
Zm00001d003014_P002	Maize	cytosol	88.89	91.43
EES12524	Sorghum	cytosol	87.96	90.48
Zm00001d025866_P001	Maize	cytosol	87.96	90.48
TraesCS3A01G517300.1	Wheat	nucleus	87.04	88.68
TraesCS3D01G524800.1	Wheat	cytosol	86.11	88.57
TraesCS4B01G361800.1	Wheat	cytosol	87.04	87.85
TraesCS4D01G354800.2	Wheat	cytosol	87.04	87.85
TraesCS5A01G529800.2	Wheat	cytosol	87.04	87.85
TraesCS3B01G584900.1	Wheat	cytosol	87.96	82.61
Bra007706.1-P	Field mustard	cytosol	95.37	82.4
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular	92.59	78.74
GSMUA_Achr11P...	Banana	extracellular, golgi	88.89	77.42
HORVU4Hr1G086790.2	Barley	mitochondrion	87.96	71.43
HORVU3Hr1G113110.1	Barley	mitochondrion	87.96	57.93

Protein Annotations

EntrezGene:100792526	MapMan:16.4.2.3	Gene3D:2.30.30.100	EMBL:ACUP02003364	EnsemblPlantsGene:GLYMA_05G240800	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0030529	GO:GO:0030532	UniProt:I1K5I1	ProteinID:KRH60443.1
EnsemblPlants:KRH60444	ProteinID:KRH60444	ProteinID:KRH60444.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423
PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_D2	UniParc:UPI000233A6FE	:

Description

hypothetical protein

Coordinates

chr5:-:41579557..41582577

Molecular Weight (calculated)

12492.4 Da

IEP (calculated)

10.639

GRAVY (calculated)

-0.672

Length

108 amino acids

Sequence
(BLAST)

001: MSRPMEEDTV GKNEEEEFNT GPLSVLMMSV KNNTQVLINC RNNKKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK AQPVNKDRFI SKMFLRGDSV
101: IIVLRNPK

Best Arabidopsis Sequence Match ( AT3G62840.2 )
(BLAST)

001: MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV
101: IIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.