CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G47640.1	Thale cress	cytosol	81.68	98.17
AT3G62840.1	Thale cress	cytosol	81.68	98.17
Bra007706.1-P	Field mustard	cytosol	82.44	86.4
CDY01762	Canola	cytosol	58.02	75.25

Protein Annotations

MapMan:16.4.2.3	Gene3D:2.30.30.100	GO:A0A078CHG5	EnsemblPlants:CDX76666	ProteinID:CDX76666	ProteinID:CDX76666.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030532	EnsemblPlantsGene:GSBRNA2T00127141001	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR12777	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_D2
UniParc:UPI0004EF499D	:	:	:	:	:

Description

BnaC08g32520D

Coordinates

chrLK031808:-:404260..406458

Molecular Weight (calculated)

15093.4 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.560

Length

131 amino acids

Sequence
(BLAST)

001: MCINICFNPF SSDEQSSLQA NNMSRPMEED TNLGKTEEEE FNTGPLSVLM MSVKNNTQVL INCRNNRKLL GRVRAFDRHC NMVLENVREM WTEVPKTGKG
101: KKKALPVNRD RFISKMFLRG DSVIIVLRNP K

Best Arabidopsis Sequence Match ( AT3G62840.1 )
(BLAST)

001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK

Arabidopsis Description

Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.