Factsheet for VIT_01s0010g02550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	nucleus
VIT_01s0011g06020.t01
VIT_01s0026g00250.t01
VIT_01s0150g00590.t01
VIT_05s0029g00040.t01	nucleus
VIT_05s0049g01840.t01
VIT_07s0005g00500.t01
VIT_10s0116g00030.t01
VIT_10s0116g00090.t01
VIT_12s0028g00110.t01
VIT_15s0046g00060.t01
VIT_16s0050g00030.t01
VIT_17s0000g03570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67580.1	VIT_01s0150g00590.t01	AT1G09760.1	20706207
AT1G67580.1	VIT_01s0026g00250.t01	AT1G23860.1	20706207
AT1G67580.1	VIT_10s0116g00030.t01	AT1G61870.1	20706207
AT1G67580.1	VIT_10s0116g00090.t01	AT1G61870.1	20706207
AT1G67580.1	VIT_17s0000g03570.t01	AT2G18740.1	20706207
AT1G67580.1	VIT_12s0028g00110.t01	AT2G26430.1	20706207
AT1G67580.1	VIT_05s0029g00040.t01	AT2G32710.1	20407024
AT1G67580.1	VIT_05s0049g01840.t01	AT2G33340.1	20706207
AT1G67580.1	VIT_15s0046g00060.t01	AT2G46610.1	20706207
AT1G67580.1	VIT_01s0011g06020.t01	AT2G47640.1	20706207
AT1G67580.1	VIT_07s0005g00500.t01	AT2G47640.1	20706207
AT1G67580.1	VIT_01s0011g06020.t01	AT3G62840.1	20706207
AT1G67580.1	VIT_07s0005g00500.t01	AT3G62840.1	20706207
AT1G67580.1	VIT_16s0050g00030.t01	AT4G25550.1	20706207
AT1G67580.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42643	Soybean	nucleus	73.87	74.77
KRH58745	Soybean	nucleus	73.87	74.66
KRH31446	Soybean	nucleus	71.62	72.78
GSMUA_Achr8P01120_001	Banana	nucleus	54.24	70.76
KRG97452	Soybean	nucleus	57.43	69.17
CDY01821	Canola	nucleus	61.8	66.86
Bra004236.1-P	Field mustard	nucleus	62.73	66.71
CDX96081	Canola	nucleus	62.73	66.71
GSMUA_Achr5P25400_001	Banana	nucleus	61.67	66.62
AT1G67580.1	Thale cress	nucleus	65.65	65.82
GSMUA_Achr8P08900_001	Banana	nucleus	56.5	65.64
PGSC0003DMT400044987	Potato	nucleus	68.3	64.62
GSMUA_Achr11P...	Banana	nucleus	59.68	64.47
VIT_17s0000g01810.t01	Wine grape	nucleus	45.23	63.98
Solyc05g014760.2.1	Tomato	nucleus	67.9	63.29
PGSC0003DMT400034649	Potato	nucleus	67.64	62.12
Zm00001d003222_P016	Maize	nucleus	56.9	61.46
EES12419	Sorghum	nucleus	56.37	61.42
Os04t0488000-01	Rice	nucleus	57.43	60.99
TraesCS6A01G214100.1	Wheat	nucleus	52.79	58.96
TraesCS2A01G346500.1	Wheat	nucleus	56.76	58.95
TraesCS6B01G244100.1	Wheat	nucleus	52.25	58.89
TraesCS2D01G345200.4	Wheat	nucleus	56.63	58.82
Zm00001d025739_P006	Maize	nucleus	55.84	58.47
Os02t0602100-02	Rice	nucleus	53.71	58.44
TraesCS2B01G364800.5	Wheat	nucleus	56.63	58.1
TraesCS6D01G196700.1	Wheat	nucleus	51.99	58.07
EES05381	Sorghum	nucleus	51.59	57.63
HORVU6Hr1G054600.5	Barley	nucleus	51.86	57.58
Zm00001d017128_P002	Maize	nucleus	50.66	57.53
HORVU2Hr1G084400.1	Barley	nucleus	56.1	56.18
VIT_15s0045g00310.t01	Wine grape	cytosol	18.43	47.28
VIT_08s0056g00210.t01	Wine grape	cytosol	17.24	42.9
VIT_18s0122g00550.t01	Wine grape	cytosol	17.77	41.49
VIT_14s0006g02280.t01	Wine grape	cytosol	16.84	36.6
VIT_17s0000g02960.t01	Wine grape	cytosol	18.04	32.23
VIT_07s0031g02680.t01	Wine grape	cytosol	20.03	31.39
VIT_09s0070g00320.t01	Wine grape	cytosol	10.48	30.15
VIT_02s0033g01110.t01	Wine grape	cytosol	16.58	27.65
VIT_07s0151g00350.t01	Wine grape	mitochondrion	17.11	27.51

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100246062	wikigene:100246062	MapMan:13.1.1.2.7	MapMan:18.4.3.1.7	Gene3D:3.30.200.20
ProteinID:CCB51242	ProteinID:CCB51242.1	UniProt:F6HG49	EMBL:FN595754	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0007049	GO:GO:0007275	GO:GO:0007346
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010468
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0048586	GO:GO:0071472	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100246062	wikigene:LOC100246062	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00015CB76B	ArrayExpress:VIT_01s0010g02550	EnsemblPlantsGene:VIT_01s0010g02550	EnsemblPlants:VIT_01s0010g02550.t01	unigene:Vvi.12782	RefSeq:XP_002266306
RefSeq:XP_002266306.2	RefSeq:XP_019077364.1	RefSeq:XP_019077366.1	RefSeq:XP_019077368.1	RefSeq:XP_019077369.1	RefSeq:XP_019077370.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:19607521..19610854

Molecular Weight (calculated)

85438.2 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.888

Length

754 amino acids

Sequence
(BLAST)

001: MAAGRHGGYR DNEFKERESD LDVSRRNFAY SKDEYDRSRN GNREGRIRDS RERNRVRQKD IKERESINGG YRSSSSRSDS GSSGGGGGVP RRCVFSVRTA
101: DREPGELSSE SGSDDGIESE SQANNEFSKV ENGIRSPLDR KRKFSPIVWD REDKESNNSS KSRIASTATA LPPPPPLPKT YRQSPKLIQD EGMRVSPAKN
201: SKIQRSQLPP SPSLPPVAPL SVTLDVSSSP IELNTSSPQE QRWSNEKEAD QIEDEDYVPT RNISSSRWAD EANSPVDEGE ILDDEEIPKR RKKMFLSEGL
301: EPRVLKKSVS PELGELKREG SEGARAKSTD SDERGNRGRS GTREDYPDNN SDRNDYMEIE DYHNNDASAR QSDTDSEHEN VSRETPEPAL PPQRSVNMLQ
401: GCRSVDEFER LNKIDEGTYG VVYRAKDKKT GEIVALKKVK MEKEREGFPL TSLREINILL SFHHPSIVDV KEVVVGSNLD SIFMVMEYME HDLKGLMETM
501: KQPFSQSEVK CLMLQLLEGI KYLHDNWVLH RDLKTSNLLL NNRGELKICD FGLARQYGSP LKPYTHLVVT LWYRAPELLL GAKQYSTAID MWSLGCIMAE
601: LLSKEPLFNG KTELDQIDKI FRTLGTPSET IWPGFSKLPG VKVNFVKHQY NLLRKKFPAT SFTGSPVLSD SGFDLLNKLL TYDPEKRITA EAALNHDWFR
701: EVPLPKSKDF MPTFPAQHAQ DRRVRRIMKS PDPLEEQRRK ELQQGELGAG GLFG

Best Arabidopsis Sequence Match ( AT1G67580.2 )
(BLAST)

001: MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF
101: SARSVDREPG ELSSESGSDD LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP PPPLVKRSSQ SPSVSCGGNS
201: HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAGNSSPT DEVEIVEEVG EKKRRKKPFP
301: VQGRFRNTSQ TPEVGELVRE GYRSSDSDER GHHSLPGSRD DFEERDAVKS DKMEIDEEEH RRENSVDSLS ETDSDDEYVR HETPEPASTP LRSINMLQGC
401: RSVDEFERLN KIDEGTYGVV YRAKDKKTGE IVALKKVKME KEREGFPLTS LREINILLSF HHPSIVDVKE VVVGSSLDSI FMVMEYMEHD LKALMETMKQ
501: RFSQSEVKCL MLQLLEGVKY LHDNWVLHRD LKTSNLLLNN RGELKICDFG LARQYGSPLK PYTHLVVTLW YRAPELLLGA KQYSTAIDMW SLGCIMAELL
601: MKAPLFNGKT EFDQLDKIFR ILGTPNESIW PGFSKLPGVK VNFVKHQYNL LRKKFPATSF TGAPVLSDAG FDLLNKLLTY DPERRITVNE ALKHDWFREV
701: PLPKSKDFMP TFPAQHAQDR RGRRMVKSPD PLEEQRRKEL TQTELGSGGL FG

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.