Factsheet for VIT_12s0028g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033021_P001	Maize	cytosol	27.52	81.97
PGSC0003DMT400009464	Potato	cytosol	33.21	75.1
KRG92800	Soybean	nucleus	59.08	72.69
Solyc01g098350.2.1	Tomato	nucleus	56.51	72.3
KRH33999	Soybean	nucleus	59.27	72.1
Bra012508.1-P	Field mustard	nucleus	52.66	69.49
HORVU6Hr1G056640.2	Barley	plastid	10.83	69.41
CDY51595	Canola	nucleus	52.48	69.25
Zm00001d019681_P002	Maize	nucleus	26.97	69.01
PGSC0003DMT400057824	Potato	nucleus	56.7	68.97
CDY03883	Canola	nucleus	52.48	68.59
GSMUA_Achr8P06830_001	Banana	nucleus	55.23	67.64
VIT_17s0053g01060.t01	Wine grape	cytosol	13.03	67.62
AT2G26430.1	Thale cress	cytosol	51.56	67.55
TraesCS6B01G362300.1	Wheat	nucleus	48.81	64.88
TraesCS6A01G331500.1	Wheat	nucleus	48.81	64.56
TraesCS6D01G310800.2	Wheat	nucleus	48.44	64.39
Os01t0377500-01	Rice	nucleus	50.09	63.93
HORVU6Hr1G080430.3	Barley	nucleus	47.71	58.3
KXG30252	Sorghum	nucleus	33.76	56.97
Zm00001d019684_P002	Maize	mitochondrion	23.49	45.88
Zm00001d033023_P001	Maize	cytosol	18.35	40.65
CDY27590	Canola	cytosol	37.98	33.28
Bra032800.1-P	Field mustard	cytosol	37.8	33.12
CDX84949	Canola	cytosol	15.41	23.93
VIT_18s0001g12980.t01	Wine grape	nucleus	17.43	21.49
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	3.12	19.32
VIT_00s0125g00270.t01	Wine grape	nucleus	19.82	18.43
VIT_05s0020g03060.t01	Wine grape	nucleus	10.64	18.41
VIT_19s0027g01670.t01	Wine grape	nucleus	20.92	18.3
VIT_00s0360g00050.t01	Wine grape	cytosol	8.26	17.93

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100241975	wikigene:100241975	MapMan:13.1.1.1.8	ProteinID:CCB47470	ProteinID:CCB47470.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	UniProt:F6H5C3	EMBL:FN595235	GO:GO:0000307
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409
EntrezGene:LOC100241975	wikigene:LOC100241975	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000210A096	ArrayExpress:VIT_12s0028g00110	EnsemblPlantsGene:VIT_12s0028g00110	EnsemblPlants:VIT_12s0028g00110.t01
RefSeq:XP_002279618	RefSeq:XP_002279618.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:758349..766984

Molecular Weight (calculated)

62877.6 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.847

Length

545 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LTDEQLKNSP SRKDGIDEAT EMTLRIYGCD LIQESGILLR LPQVVMATGQ VLFHRFYCKK SFARFNVKRV AASCVWLASK LEESLRKARQ
101: VLIVFHRMEC RRENLPVVHL DPFSKKYAEL KTHLSRTERH ILKEMGFICH VEHPHKFISN YLATLKTPPE LRQEAWNLAN DSLRTTLCVR FKSEVVACGV
201: VYAAARRFQV PLPENEPWWE VFDAEKSAID EVCRVLAHLY NLPKAQYIPV CKDGDSFTSS NKSQDSQTQP VSKEVLQSGP SANNDTVTPK AASALINPES
301: GGSKNSMVKQ ALDMLKESKK GDDDPKSMAV EGEGREEPIP SKSEHRTEAS GERNKERDKE RERERERDRD RDRERERAKA RDRDRGRDSD RERERDEIDK
401: DREKVKDRKH RSKDKGKDSD ITHLEIETTT APLILQGRRI AIDIILTLEL VAKDCMHEYF RDSLPLHATG VEEDRSSLEN NESSRGPYDI LTINCKLQQS
501: SLELSTHSHY LPPEKKLPKT LQCHSIHHKT KRNILRAKKN EKYEE

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.