Factsheet for VIT_13s0019g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_01s0011g05370.t01
VIT_01s0011g05860.t01
VIT_01s0026g02730.t01
VIT_02s0012g02000.t01
VIT_03s0180g00030.t01
VIT_04s0008g05010.t01
VIT_05s0020g01730.t01
VIT_06s0004g04340.t01
VIT_06s0061g00810.t01
VIT_07s0031g02330.t01
VIT_07s0130g00410.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_11s0016g03260.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_13s0019g00640.t01
VIT_15s0021g02230.t01
VIT_17s0000g08170.t01
VIT_18s0001g14170.t01	endoplasmic reticulum
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13840.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT5G13840.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT5G13840.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT5G13840.1	VIT_01s0011g05860.t01	AT1G14810.1	20706207
AT5G13840.1	VIT_18s0001g14170.t01	AT1G20610.1	20407024
AT5G13840.1	VIT_01s0011g05370.t01	AT1G23190.1	20706207
AT5G13840.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT5G13840.1	VIT_01s0026g02730.t01	AT2G04660.1	20706207
AT5G13840.1	VIT_11s0016g03260.t01	AT2G20000.1	17944809
AT5G13840.1	VIT_11s0016g03260.t01	AT2G20000.1	20706207
AT5G13840.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G13840.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G13840.1	VIT_05s0020g01730.t01	AT2G39090.1	20706207
AT5G13840.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT5G13840.1	VIT_15s0021g02230.t01	AT3G20050.1	20706207
AT5G13840.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT5G13840.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT5G13840.1	VIT_08s0007g07790.t01	AT3G57860.1	20706207
AT5G13840.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT5G13840.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT5G13840.1	VIT_03s0180g00030.t01	AT4G34150.1	20706207
AT5G13840.1	VIT_06s0004g04340.t01	AT5G02530.1	20706207
AT5G13840.1	VIT_13s0019g00640.t01	AT5G02530.1	20706207
AT5G13840.1	VIT_04s0008g05010.t01	AT5G25460.1	20706207
AT5G13840.1	VIT_07s0130g00410.t01	AT5G26360.1	20706207
AT5G13840.1	VIT_17s0000g08170.t01	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G13840.1	Thale cress	plastid	85.14	83.37
PGSC0003DMT400076326	Potato	nucleus, plastid	87.69	82.27
CDX70523	Canola	plastid	81.74	82.27
CDX78541	Canola	plastid	81.53	82.05
Solyc06g043150.2.1	Tomato	nucleus, plastid	86.2	81.36
Bra006219.1-P	Field mustard	plastid	83.65	81.07
KRG97899	Soybean	plastid	83.86	80.78
KRH30985	Soybean	plastid	85.56	80.6
GSMUA_Achr5P07090_001	Banana	plastid	75.58	78.41
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	72.4	71.34
EES02145	Sorghum	plastid	71.76	70.12
Zm00001d041957_P004	Maize	plastid	71.76	69.69
TraesCS3D01G533000.1	Wheat	plastid	70.7	68.94
TraesCS3B01G595600.1	Wheat	plastid	70.91	68.87
TraesCS3A01G527600.1	Wheat	plastid	70.49	68.17
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	58.39	60.84
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	70.91	56.9
VIT_05s0029g01120.t01	Wine grape	nucleus	38.0	43.34
VIT_05s0102g00550.t01	Wine grape	nucleus	38.0	43.34
VIT_05s0102g00640.t01	Wine grape	nucleus	37.79	43.1
VIT_05s0102g00680.t01	Wine grape	nucleus	37.79	42.89
VIT_15s0107g00320.t01	Wine grape	nucleus	40.98	42.89
VIT_16s0039g02510.t01	Wine grape	nucleus	40.34	42.13
VIT_16s0013g00280.t01	Wine grape	nucleus	34.61	35.82
VIT_16s0039g02620.t01	Wine grape	cytosol	15.07	30.6
Os01t0973000-01	Rice	cytosol	0.64	1.07

Protein Annotations

EntrezGene:100252996	wikigene:100252996	MapMan:13.3.4.1.3	Gene3D:2.130.10.10	EMBL:AM468363	ProteinID:CAN74903
ProteinID:CAN74903.1	ProteinID:CBI31655	ProteinID:CBI31655.3	InterPro:Cdc20/Fizzy	UniProt:D7TLR8	EMBL:FN595998
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100252996	wikigene:LOC100252996	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320
SUPFAM:SSF50978	TIGR:TC61653	UniParc:UPI00015C9960	ArrayExpress:VIT_13s0019g01840	EnsemblPlantsGene:VIT_13s0019g01840	EnsemblPlants:VIT_13s0019g01840.t01
unigene:Vvi.26431	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002283264	RefSeq:XP_002283264.1	RefSeq:XP_010658548.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:3190385..3193037

Molecular Weight (calculated)

51439.7 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.427

Length

471 amino acids

Sequence
(BLAST)

001: MDSSERRKSG LNLPAGMSET SLRLETFSGS YRAISNLSSP SKATSCSDRF IPCRSSSRLH TFGLIEKASP VKEGGNEAYF RLLKQELFGS DFGSSPAGQG
101: SPMSPSKNML RFKTDHSGPN SPFSPSIFGP DSGFSSEAST PPKPPRKVPK TPHKVLDAPS LQDDFYLNLV DWSSQNVLAV GLGTCVYLWT ASTSKVTKLC
201: DLGPSDSVCS VQWTREGSYI SIGTHLGQVQ VWDGTQCKKV RTMSGHQTRT GVLAWSSRIL SSGSRDRNIL QHDLRVSNDF VSKLVGHKSE VCGLKWSHDD
301: RELASGGNDN QLLVWNQHSQ QPVLKLTEHT AAVKAIAWSP HQSGLLASGG GTADRCIRFW STTNGNQLNH VDTGSQVCNL AWSKNVNELV STHGYSQNQI
401: MVWKYPSMTK VATLTGHSLR VLYLAMSPDG QTIVTGAGDE TLRFWNIFPS MKTPAPVKDT GVWSMGRTHI R

Best Arabidopsis Sequence Match ( AT5G13840.1 )
(BLAST)

001: MASPQSTKTG LNLPAGMNQT SLRLETFSSS FRGISSLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFASPLLSP
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R

Arabidopsis Description

FZR3Protein FIZZY-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.