Factsheet for VIT_16s0013g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33341	Soybean	nucleus	65.05	65.49
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	63.74	63.04
KRH70386	Soybean	cytosol	38.9	61.25
PGSC0003DMT400013474	Potato	cytosol	63.52	60.71
GSMUA_Achr10P...	Banana	nucleus	50.55	56.51
GSMUA_Achr11P...	Banana	mitochondrion	47.25	50.95
VIT_15s0107g00320.t01	Wine grape	nucleus	44.18	44.67
VIT_16s0039g02510.t01	Wine grape	nucleus	44.18	44.57
VIT_05s0029g01120.t01	Wine grape	nucleus	40.22	44.31
VIT_05s0102g00550.t01	Wine grape	nucleus	40.22	44.31
VIT_05s0102g00640.t01	Wine grape	nucleus	40.22	44.31
VIT_05s0102g00680.t01	Wine grape	nucleus	40.22	44.1
VIT_13s0019g01840.t01	Wine grape	plastid	35.82	34.61
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	34.07	34.29
VIT_16s0039g02620.t01	Wine grape	cytosol	16.26	31.9

Protein Annotations

EntrezGene:100247826	wikigene:100247826	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	ProteinID:CCB61170	ProteinID:CCB61170.1
InterPro:Cdc20/Fizzy	UniProt:F6I2K3	EMBL:FN596738	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100247826	wikigene:LOC100247826	PFAM:PF00400	PFAM:PF08662	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF15	SMART:SM00320	SUPFAM:SSF50978	InterPro:TIF_beta_prop-like
UniParc:UPI0001984D6A	ArrayExpress:VIT_16s0013g00280	EnsemblPlantsGene:VIT_16s0013g00280	EnsemblPlants:VIT_16s0013g00280.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002277711	RefSeq:XP_002277711.2	RefSeq:XP_010662226.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:5219111..5222413

Molecular Weight (calculated)

51756.1 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.547

Length

455 amino acids

Sequence
(BLAST)

001: MSRFNGDWYS PTRLHDSPTQ YHFPGDRFIP NRSLMDLDQA HTLLTSRTRE VCNSTFGQDE YRRKLEENLF FDSEGRPFRM LVFRGSPKSS KKSIRFLDEM
101: QQQDEAEALH NKNIKQFQYR HLPKKESRVL DAPRINDDYY LNIMDWGKRN ILAIALGSDL YLWNAETGHS QKLMQVDDQE DYPTSIAWCE DGRRVAVGHL
201: SSKLQLWDAE TFKLIRSLEG HDDRVGIAAW NGQILTSGSR DKSIINHDVR ARNSLTCRVQ IHSQEVCGLK WSITGNKLAS GGNENLIYIW EASKMCSSNF
301: LHRFSGHQAA VKALAWCPYQ SDVLASGGGT LDGCIKIWNI QKGTCINSIR ANAQICGLEW NRHHKEILSG HGFSATGHQN ELCLWKYPSM SKLGELKCHS
401: SRVLHLSQSP DGSTVVSAGA DETLRFWEVF GPPVTDSSRV SDLDSLLSFK RSLIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.