Factsheet for GSMUA_Achr11P07110_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	70.85	73.46
VIT_16s0013g00280.t01	Wine grape	nucleus	50.95	47.25
KRH70386	Soybean	cytosol	31.99	46.71
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	49.29	45.22
PGSC0003DMT400013474	Potato	cytosol	49.53	43.91
KRH33341	Soybean	nucleus	46.21	43.14
GSMUA_Achr1P27670_001	Banana	cytosol	6.4	42.86
GSMUA_AchrUn_...	Banana	cytosol	8.53	41.38
GSMUA_Achr1P27660_001	Banana	mitochondrion	14.69	38.51
GSMUA_AchrUn_...	Banana	cytosol	21.8	38.49
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	42.89	38.27
GSMUA_Achr11P...	Banana	plastid	42.65	37.97
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	42.18	37.01
GSMUA_Achr1P25940_001	Banana	cytosol	25.83	36.7
GSMUA_AchrUn_...	Banana	cytosol	30.09	34.89
GSMUA_AchrUn_...	Banana	cytosol	25.12	34.75
GSMUA_AchrUn_...	Banana	nucleus	33.65	34.55
GSMUA_Achr1P28050_001	Banana	cytosol	32.94	34.15
GSMUA_Achr3P21370_001	Banana	cytosol	31.75	33.75
GSMUA_Achr5P07090_001	Banana	plastid	34.83	32.38
GSMUA_Achr11P...	Banana	plastid	35.31	30.66
GSMUA_Achr11P...	Banana	plastid	34.12	29.33
GSMUA_AchrUn_...	Banana	cytosol	18.48	27.27
GSMUA_Achr2P19120_001	Banana	cytosol	17.06	26.97

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_Achr11G07110_001	EnsemblPlants:GSMUA_Achr11P07110_001	EnsemblPlants:GSMUA_Achr11T07110_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RQ41	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002966601	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

WD repeat-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G07110_001]

Coordinates

chr11:-:5558926..5561156

Molecular Weight (calculated)

47393.3 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.425

Length

422 amino acids

Sequence
(BLAST)

001: MNLDFARSSL MRHPRRDGAT VDRPDILTPK EEYRRRVEES WTLDSQGKPL KMLVFRGSPR KSHPSVLMVD EILKEQREPP RSIRRIRHLP QSADRILDGP
101: ELIDDYYLNL MDWGKSNILA VALGRSLCLW NAANSMVQLL LTTDVDDHPT SVAWSVDGKM VAVGFASSKV EIWDAIALQQ VRILEGHLAR VGSLSWTWNM
201: LSSGSRDASI SNHDVRSFRH VSSKLKAHTG DVCGLKWSCG GDLLASGGND NLVHVWESSK MGSSRYLHRF TDHRAAVRAL AWCPFQPKTL ASGGGTADQC
301: VKIWNVQTGK CTNSINTSAQ ARRSRTQPLG ITWYQKEILS AHGYNQNRLS LWAYPSLAKI TDFTGHTDRI LQLSQSPDGS TVVSAAADET IRFWKVFEPT
401: PCSSPSMDDE DRLFSLRRTH IR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.