Factsheet for GSMUA_AchrUn_randomP01680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr2P01090_001
GSMUA_Achr2P21510_001
GSMUA_Achr3P19380_001
GSMUA_Achr3P22960_001
GSMUA_Achr5P09040_001
GSMUA_Achr5P26960_001
GSMUA_Achr6P23290_001
GSMUA_Achr8P16590_001
GSMUA_Achr8P30740_001
GSMUA_Achr9P29220_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	GSMUA_Achr9P29220_001	AT1G06590.1	20706207
AT4G33270.1	GSMUA_Achr8P30740_001	AT1G78770.1	20706207
AT4G33270.1	GSMUA_Achr3P19380_001	AT2G04660.1	20706207
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	20706207
AT4G33270.1	GSMUA_Achr5P26960_001	AT2G39090.1	20706207
AT4G33270.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr11P...	AT3G48150.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr3P22960_001	AT4G28230.1	20706207
AT4G33270.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT4G33270.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G26900.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G27080.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr11P...	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr2P01090_001	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT5G27080.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G27570.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P28050_001	Banana	cytosol	81.12	57.0
GSMUA_AchrUn_...	Banana	cytosol	66.08	51.92
GSMUA_AchrUn_...	Banana	cytosol	43.36	40.66
GSMUA_AchrUn_...	Banana	nucleus	58.04	40.39
GSMUA_Achr3P21370_001	Banana	cytosol	51.05	36.78
KRH07005	Soybean	nucleus	15.38	35.48
CDY13491	Canola	cytosol	35.31	27.45
GSMUA_Achr1P25940_001	Banana	cytosol	27.27	26.26
Bra037011.1-P	Field mustard	nucleus	37.41	25.54
CDX68960	Canola	nucleus	36.36	25.18
AT4G33260.1	Thale cress	nucleus	38.81	24.83
AT5G27080.1	Thale cress	nucleus	37.76	24.43
CDY52543	Canola	nucleus	36.36	24.3
AT4G33270.1	Thale cress	nucleus	38.81	24.29
Bra005544.1-P	Field mustard	nucleus	37.06	24.15
AT5G26900.1	Thale cress	nucleus	37.41	24.1
CDY28290	Canola	cytosol, mitochondrion, nucleus	12.24	23.97
AT5G27570.1	Thale cress	nucleus	37.41	23.78
CDY59109	Canola	nucleus	34.62	23.63
CDY59110	Canola	nucleus	34.62	23.63
KRH44738	Soybean	nucleus	36.36	23.53
GSMUA_Achr11P...	Banana	plastid	38.81	23.42
Bra008327.1-P	Field mustard	cytosol, mitochondrion	34.62	23.13
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	38.11	23.04
Solyc08g005420.2.1	Tomato	nucleus	36.01	22.99
Bra034555.1-P	Field mustard	nucleus	30.07	22.69
PGSC0003DMT400047585	Potato	nucleus	35.31	22.54
KRH68047	Soybean	nucleus	35.31	22.1
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	36.71	21.83
KRG94456	Soybean	cytosol	17.48	21.28
GSMUA_AchrUn_...	Banana	cytosol	17.48	20.92
GSMUA_Achr10P...	Banana	nucleus	29.02	20.39
CDY44519	Canola	cytosol, nucleus	34.62	19.08
GSMUA_Achr11P...	Banana	mitochondrion	27.27	18.48
GSMUA_Achr5P07090_001	Banana	plastid	27.27	17.18
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	25.17	16.82
CDY46124	Canola	cytosol	33.57	15.48
Bra011430.1-P	Field mustard	cytosol	38.11	15.24
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	10.14	15.03
GSMUA_Achr11P...	Banana	plastid	24.83	14.61
CDY26774	Canola	mitochondrion	5.59	14.55
GSMUA_Achr11P...	Banana	plastid	23.43	13.65
CDY59111	Canola	nucleus	9.79	12.96
GSMUA_AchrUn_...	Banana	cytosol	3.5	11.49
GSMUA_Achr2P19120_001	Banana	cytosol	9.44	10.11
CDY71694	Canola	nucleus	5.59	9.25
GSMUA_Achr1P27660_001	Banana	mitochondrion	4.9	8.7
GSMUA_Achr1P27670_001	Banana	cytosol	1.75	7.94

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_AchrUn_randomG01680_001	EnsemblPlants:GSMUA_AchrUn_randomP01680_001
EnsemblPlants:GSMUA_AchrUn_randomT01680_001	InterPro:IPR015943	UniProt:M0U5I0	PFAM:PF12894	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30
SUPFAM:SSF117289	UniParc:UPI000294C0CF	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01680_001]

Coordinates

chrchrUn_random:+:6620009..6621836

Molecular Weight (calculated)

32453.8 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.272

Length

286 amino acids

Sequence
(BLAST)

001: MDMDYARFAL TRPSKPQRDG SRESPSSVAY QKLLDECILK NRSRIFAFKT APEAPASKLP EFDEPIRPQK KQQRRIPKEP ERVLVIHGLL DDNVLNLLDW
101: GSNNVLAIGL EDAAYLWDAA NESTKLLQPV EDRGPITCIR WSPDCAVLAV AFGNSDLALI DPATGHVVDG MEDENQTPVL SLAWRSNSTV GRFDGTVVDY
201: DFRKDDMFIY FYYGHRRGVC SLKWSVLSGR SVVGNIAMGS CVVSKRQHIF IQAHGFEIFK YERNRIRFLM IFNMALVSHE DITLHT

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.