CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71694	Canola	nucleus	54.17	67.63
CDY26774	Canola	mitochondrion	34.26	67.27
CDY71065	Canola	cytosol	25.93	54.37
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	48.15	53.89
GSMUA_Achr1P27660_001	Banana	mitochondrion	39.81	53.42
GSMUA_AchrUn_...	Banana	cytosol	21.3	52.87
GSMUA_Achr1P27670_001	Banana	cytosol	14.81	50.79
GSMUA_AchrUn_...	Banana	cytosol	51.39	46.44
KRG94456	Soybean	cytosol	49.07	45.11
CDY59109	Canola	nucleus	86.57	44.63
CDY59110	Canola	nucleus	86.57	44.63
CDY52543	Canola	nucleus	86.57	43.69
CDY13491	Canola	cytosol	68.98	40.49
GSMUA_Achr1P25940_001	Banana	cytosol	52.31	38.05
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	74.07	37.38
AT5G27570.1	Thale cress	nucleus	74.54	35.78
AT5G27080.1	Thale cress	nucleus	73.15	35.75
GSMUA_AchrUn_...	Banana	cytosol	50.46	35.74
AT5G26900.1	Thale cress	nucleus	72.69	35.36
KRH44738	Soybean	nucleus	71.3	34.84
KRH68047	Soybean	nucleus	73.61	34.79
Solyc08g005420.2.1	Tomato	nucleus	68.06	32.81
CDX68960	Canola	nucleus	62.04	32.45
PGSC0003DMT400047585	Potato	nucleus	66.67	32.14
CDX75343	Canola	nucleus	54.63	31.64
CDY44519	Canola	cytosol, nucleus	69.91	29.09
GSMUA_Achr3P21370_001	Banana	cytosol	51.39	27.96
CDY04804	Canola	mitochondrion, plastid	20.37	27.5
GSMUA_AchrUn_...	Banana	nucleus	51.85	27.25
GSMUA_Achr1P28050_001	Banana	cytosol	50.46	26.78
GSMUA_AchrUn_...	Banana	cytosol	44.44	26.37
CDX90811	Canola	nucleus	49.07	23.4
CDX78541	Canola	plastid	50.46	23.29
CDY51550	Canola	nucleus	48.61	23.13
CDX70523	Canola	plastid	50.0	23.08
CDX94473	Canola	nucleus	49.07	22.46
CDX86737	Canola	nucleus	49.07	22.32
CDY10820	Canola	nucleus, plastid	48.15	22.13
CDY41283	Canola	nucleus, plastid	48.15	22.08
CDY46124	Canola	cytosol	52.31	18.23
CDX94136	Canola	nucleus, plastid	25.93	14.66
CDX98239	Canola	nucleus	7.41	11.94
GSMUA_AchrUn_...	Banana	cytosol	12.96	9.79
KRH07005	Soybean	nucleus	0.46	0.81
CDY71640	Canola	nucleus, plastid	0.46	0.42
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078J7G6	EnsemblPlants:CDY59111	ProteinID:CDY59111	ProteinID:CDY59111.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00025567001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDC68B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaCnng34310DBnaCnng34310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7G6]

Coordinates

chrLK033726:-:38835..40817

Molecular Weight (calculated)

23559.7 Da

IEP (calculated)

8.245

GRAVY (calculated)

-0.346

Length

216 amino acids

Sequence
(BLAST)

001: MDGKIINNDV RIRSHVVGTY RGHTGEICGL KWSGSGMQLA SGGNDNVLYS CSVHVWDRSS ASSRWLHRLE EHTSAVKALA WCPFQSNLLA TGGGGTDGAI
101: KFWNTHTGAC LNSVDTGSQV CALLWSKNDR ELLSSHGFSQ NHLALWKYPS LVKMAELTGH TSRVLYMTQS PDGSTVASAA GDESLRFWDV FGMPDTAKKP
201: DQKAAHEPFS PVPRIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.