CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46124	Canola	cytosol	94.2	34.03
CDY44519	Canola	cytosol, nucleus	5.36	2.31
CDX68960	Canola	nucleus	0.45	0.24
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	0.0	0.0
CDY71694	Canola	nucleus	0.0	0.0
CDY71640	Canola	nucleus, plastid	0.0	0.0
CDY71065	Canola	cytosol	0.0	0.0
CDY59111	Canola	nucleus	0.0	0.0
CDY59110	Canola	nucleus	0.0	0.0
CDY59109	Canola	nucleus	0.0	0.0
CDY52543	Canola	nucleus	0.0	0.0
CDY51550	Canola	nucleus	0.0	0.0
CDY41283	Canola	nucleus, plastid	0.0	0.0
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY26774	Canola	mitochondrion	0.0	0.0
CDY13491	Canola	cytosol	0.0	0.0
CDY10820	Canola	nucleus, plastid	0.0	0.0
CDY04804	Canola	mitochondrion, plastid	0.0	0.0
CDX98239	Canola	nucleus	0.0	0.0
CDX94473	Canola	nucleus	0.0	0.0
CDX94136	Canola	nucleus, plastid	0.0	0.0
CDX90811	Canola	nucleus	0.0	0.0
CDX86737	Canola	nucleus	0.0	0.0
CDX78541	Canola	plastid	0.0	0.0
CDX75343	Canola	nucleus	0.0	0.0
CDX70523	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.25.40.250	MapMan:17.4.1.3.11	GO:A0A078CEW6	InterPro:ARM-type_fold	EnsemblPlants:CDX75342
ProteinID:CDX75342	ProteinID:CDX75342.1	InterPro:CSN8_PSD8_EIF3K	GO:GO:0001731	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	GO:GO:0043022	EnsemblPlantsGene:GSBRNA2T00121220001	InterPro:IPR000717	InterPro:IPR016020	InterPro:IPR036388
HAMAP:MF_03010	InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR13022	SUPFAM:SSF46785
SUPFAM:SSF48371	InterPro:Transl_init_fac_sub12_N_euk	UniParc:UPI0004EE5518	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	InterPro:eIF3k

Description

BnaA01g03600D

Coordinates

chrLK031804:-:731104..732882

Molecular Weight (calculated)

25504.6 Da

IEP (calculated)

4.735

GRAVY (calculated)

-0.158

Length

224 amino acids

Sequence
(BLAST)

001: MESPKEQSSY TVEQLVAVNP FNPEILPDLE NYVNEQVTSQ TYSLDANLCL LRLYQFEPER MNTHIVARIL LKALMAMPAP DFSLCLFLIP ERVQMEEQFK
101: TLIVLSHYLE TGRFQQFWDE AAKNRHILES VPGFEQAVQA YASHLLSLSY QKVPRSVLAE AVNMDGASLD KFIEHQVATS GWIVAKEDGS IVLPQNEFNR
201: PELKKNPGEN VSLEHIARIF PILG

Best Arabidopsis Sequence Match ( AT4G33250.1 )
(BLAST)

001: MGVEIQSPQE QSSYTVEQLV ALNPFNPEIL PDLENYVNVT SQTYSLEVNL CLLRLYQFEP ERMNTHIVAR ILVKALMAMP TPDFSLCLFL IPERVQMEEQ
101: FKSLIVLSHY LETGRFQQFW DEAAKNRHIL EAVPGFEQAI QAYASHLLSL SYQKVPRSVL AEAVNMDGAS LDKFIEQQVT NSGWIVEKEG GSIVLPQNEF
201: NHPELKKNTG ENVPLEHIAR IFPILG

Arabidopsis Description

TIF3K1Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.