CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72169
CDX73850
CDX74120
CDX74867
CDX79070
CDX79885
CDX80828
CDX82264
CDX82833
CDX89193
CDX96319
CDY01062
CDY03686
CDY03687
CDY04566
CDY04835
CDY06219
CDY06464
CDY06653
CDY08491
CDY09966
CDY10211
CDY10442
CDY14051
CDY15748
CDY16358
CDY18835
CDY18994
CDY24564
CDY25374
CDY27241
CDY30292
CDY30835
CDY33444
CDY34315
CDY35917
CDY36063
CDY36901
CDY37936
CDY37939
CDY40364
CDY40468
CDY42227
CDY44628
CDY44976
CDY49990
CDY53501
CDY53538
CDY53919
CDY55173
CDY55544
CDY58069
CDY58070
CDY60348
CDY60349
CDY65406
CDY66787
CDY67306
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22910.1	CDY06219	AT1G06590.1	20706207
AT4G22910.1	CDY06653	AT1G06590.1	20706207
AT4G22910.1	CDY09966	AT1G06590.1	20706207
AT4G22910.1	CDY10211	AT1G06590.1	20706207
AT4G22910.1	CDX96319	AT1G71380.1	20706207
AT4G22910.1	CDY03686	AT1G71380.1	20706207
AT4G22910.1	CDY03687	AT1G71380.1	20706207
AT4G22910.1	CDY37936	AT1G71380.1	20706207
AT4G22910.1	CDY37939	AT1G71380.1	20706207
AT4G22910.1	CDY66787	AT1G71380.1	20706207
AT4G22910.1	CDY04835	AT2G04660.1	20706207
AT4G22910.1	CDY30292	AT2G04660.1	20706207
AT4G22910.1	CDY30835	AT2G04660.1	20706207
AT4G22910.1	CDY35917	AT2G20000.1	17944809
AT4G22910.1	CDY40468	AT2G20000.1	17944809
AT4G22910.1	CDY35917	AT2G20000.1	20706207
AT4G22910.1	CDY40468	AT2G20000.1	20706207
AT4G22910.1	CDY04566	AT2G28450.1	20706207
AT4G22910.1	CDY15748	AT2G28450.1	20706207
AT4G22910.1	CDY60348	AT2G28450.1	20706207
AT4G22910.1	CDY60349	AT2G28450.1	20706207
AT4G22910.1	CDX74867	AT2G39090.1	20706207
AT4G22910.1	CDY06464	AT2G39090.1	20706207
AT4G22910.1	CDY44628	AT2G39090.1	20706207
AT4G22910.1	CDY53538	AT2G39090.1	20706207
AT4G22910.1	CDX79885	AT2G42260.1	21798944
AT4G22910.1	CDY53501	AT2G42260.1	21798944
AT4G22910.1	CDX73850	AT3G11830.1	20706207
AT4G22910.1	CDY01062	AT3G11830.1	20706207
AT4G22910.1	CDY08491	AT3G11830.1	20706207
AT4G22910.1	CDY53919	AT3G11830.1	20706207
AT4G22910.1	CDY67306	AT3G11830.1	20706207
AT4G22910.1	CDX82264	AT3G20050.1	20706207
AT4G22910.1	CDY24564	AT3G20050.1	20706207
AT4G22910.1	CDY25374	AT3G20050.1	20706207
AT4G22910.1	CDY33444	AT3G20050.1	20706207
AT4G22910.1	CDY36063	AT3G20050.1	20706207
AT4G22910.1	CDY42227	AT3G20050.1	20706207
AT4G22910.1	CDY36901	AT3G48150.1	20706207
AT4G22910.1	CDY44976	AT3G48150.1	20706207
AT4G22910.1	CDY58069	AT3G48150.1	20706207
AT4G22910.1	CDY58070	AT3G48150.1	20706207
AT4G22910.1	CDY70805	AT3G48150.1	20706207
AT4G22910.1	CDX72169	AT3G56150.1	20706207
AT4G22910.1	CDY16358	AT3G56150.1	20706207
AT4G22910.1	CDY27241	AT3G56150.1	20706207
AT4G22910.1	CDY65406	AT3G56150.1	20706207
AT4G22910.1	CDX79070	AT4G21530.1	20706207
AT4G22910.1	CDX82833	AT4G21530.1	20706207
AT4G22910.1	CDY34315	AT4G24820.1	20706207
AT4G22910.1	CDX89193	AT4G28230.1	20706207
AT4G22910.1	CDY18994	AT4G28230.1	20706207
AT4G22910.1	CDX80828	AT5G02530.1	20706207
AT4G22910.1	CDY10442	AT5G02530.1	20706207
AT4G22910.1	CDY40364	AT5G02530.1	20706207
AT4G22910.1	CDY55544	AT5G02530.1	20706207
AT4G22910.1	CDY14051	AT5G07310.1	20706207
AT4G22910.1	CDY55173	AT5G07310.1	20706207
AT4G22910.1	CDX74120	AT5G26360.1	20706207
AT4G22910.1	CDY18835	AT5G26360.1	20706207
AT4G22910.1	CDY49990	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71640	Canola	nucleus, plastid	58.9	93.75
Bra019347.1-P	Field mustard	nucleus, plastid	95.29	77.45
CDY10820	Canola	nucleus, plastid	90.05	73.19
CDY41283	Canola	nucleus, plastid	90.05	73.04
AT4G22910.1	Thale cress	nucleus, plastid	87.96	69.57
CDX94473	Canola	nucleus	73.82	59.75
CDX86737	Canola	nucleus	74.08	59.58
CDX90811	Canola	nucleus	68.59	57.84
CDY51550	Canola	nucleus	68.32	57.49
PGSC0003DMT400058525	Potato	nucleus, plastid	69.9	55.86
Solyc08g080080.2.1	Tomato	nucleus, plastid	69.9	55.51
GSMUA_Achr11P...	Banana	plastid	69.63	54.73
Solyc12g056490.1.1	Tomato	nucleus, plastid	67.8	53.85
PGSC0003DMT400027994	Potato	nucleus, plastid	68.06	53.5
Zm00001d027430_P001	Maize	plastid	67.8	50.39
Zm00001d048472_P001	Maize	nucleus, plastid	67.54	49.62
TraesCS4B01G346200.2	Wheat	nucleus, plastid	64.92	48.34
TraesCS4D01G341200.1	Wheat	nucleus, plastid	64.66	48.24
GSMUA_Achr11P...	Banana	plastid	60.99	47.45
Os03t0123300-01	Rice	plastid	64.66	47.23
CDX70523	Canola	plastid	56.02	45.73
CDX78541	Canola	plastid	55.76	45.51
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	64.4	43.69
CDY26774	Canola	mitochondrion	12.3	42.73
TraesCS1B01G166800.1	Wheat	cytosol	46.34	41.84
TraesCS7B01G353500.1	Wheat	plastid	43.19	40.74
OQU93351	Sorghum	nucleus	67.8	37.21
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	16.23	32.12
CDY59109	Canola	nucleus	32.46	29.59
CDY59110	Canola	nucleus	32.46	29.59
CDY52543	Canola	nucleus	32.46	28.97
CDX75343	Canola	nucleus	28.27	28.95
CDX68960	Canola	nucleus	30.1	27.84
CDY13491	Canola	cytosol	26.44	27.45
CDY59111	Canola	nucleus	14.66	25.93
CDY44519	Canola	cytosol, nucleus	32.98	24.28
CDX98239	Canola	nucleus	7.59	21.64
CDY28290	Canola	cytosol, mitochondrion, nucleus	8.12	21.23
CDY71694	Canola	nucleus	9.16	20.23
CDY04804	Canola	mitochondrion, plastid	7.33	17.5
CDY46124	Canola	cytosol	27.49	16.94
CDY71065	Canola	cytosol	2.62	9.71
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX94136	ProteinID:CDX94136	ProteinID:CDX94136.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00157053001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE7CD8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC07g37700D

Coordinates

chrLK031879:+:903356..905474

Molecular Weight (calculated)

41674.7 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.414

Length

382 amino acids

Sequence
(BLAST)

001: MEDPTASNAT PPANSSPQLS PPPSMNTPII SLESRINRLI NANQSPSPSR SIYSDRFIPS RSGSNYALFD LAKDGKEDGA GSYATLLRAA MFGPETPEKR
101: DITGFSTSPN IFRFKTETNR RLDSFSPFVS DDGSGVSQSP IKALRKVSRS PYKVLDAPAL QDDFYLNLVD WSAQNVLAVG LGNCVYLWNA SSSKVTTLCD
201: LGAGDSVCSV GWNFRGTHLA VGTSTGKLQI WDASRCKRTR TMEGHRLRVG ALAWSSSVLS SGSRDKSILQ RDIRCEEDHV SKLTGHKSEV CGLKWSYDNR
301: ELASGGNDNR LFVWNQHSTQ PVLKYSEHTA AVKAIAWSPH VHGLLASGGG TADRCIRFWN TTTNTHLSSI DTGSQVYFLS LT

Best Arabidopsis Sequence Match ( AT4G11920.1 )
(BLAST)

001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR

Arabidopsis Description

FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.