Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc08g080080.2.1 | Tomato | nucleus, plastid | 99.16 | 98.54 |
VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 78.24 | 82.74 |
KRH57275 | Soybean | nucleus | 77.82 | 81.05 |
PGSC0003DMT400027994 | Potato | nucleus, plastid | 81.8 | 80.45 |
KRH77460 | Soybean | nucleus, plastid | 72.59 | 75.6 |
CDY10820 | Canola | nucleus, plastid | 73.85 | 75.11 |
Bra013655.1-P | Field mustard | nucleus, plastid | 73.85 | 74.95 |
CDY41283 | Canola | nucleus, plastid | 73.85 | 74.95 |
Bra019347.1-P | Field mustard | nucleus, plastid | 73.43 | 74.68 |
AT4G22910.1 | Thale cress | nucleus, plastid | 75.31 | 74.53 |
GSMUA_Achr11P... | Banana | plastid | 74.06 | 72.84 |
KRH04001 | Soybean | mitochondrion | 78.24 | 71.1 |
CDX94136 | Canola | nucleus, plastid | 55.86 | 69.9 |
GSMUA_Achr11P... | Banana | plastid | 68.83 | 67.01 |
KRH27985 | Soybean | nucleus, plastid | 63.6 | 66.96 |
Zm00001d048472_P001 | Maize | nucleus, plastid | 72.18 | 66.35 |
Zm00001d027430_P001 | Maize | plastid | 71.34 | 66.34 |
TraesCS4D01G341200.1 | Wheat | nucleus, plastid | 68.83 | 64.26 |
TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 68.83 | 64.13 |
Os03t0123300-01 | Rice | plastid | 69.46 | 63.48 |
TraesCS1B01G166800.1 | Wheat | cytosol | 55.23 | 62.41 |
TraesCS7B01G353500.1 | Wheat | plastid | 52.72 | 62.22 |
HORVU4Hr1G084710.1 | Barley | cytosol, mitochondrion | 69.46 | 58.97 |
CDY71640 | Canola | nucleus, plastid | 28.45 | 56.67 |
PGSC0003DMT400076326 | Potato | nucleus, plastid | 59.2 | 56.37 |
OQU93351 | Sorghum | nucleus | 72.38 | 49.71 |
PGSC0003DMT400001467 | Potato | nucleus | 39.54 | 41.72 |
PGSC0003DMT400069533 | Potato | nucleus, plastid | 39.12 | 41.1 |
PGSC0003DMT400047585 | Potato | nucleus | 37.45 | 39.96 |
PGSC0003DMT400013474 | Potato | cytosol | 31.17 | 31.3 |
Protein Annotations
EntrezGene:102598991 | MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 |
InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1C2T4 | PFAM:PF00400 | PFAM:PF12894 | EnsemblPlantsGene:PGSC0003DMG400022734 |
PGSC:PGSC0003DMG400022734 | EnsemblPlants:PGSC0003DMT400058525 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 |
PANTHER:PTHR19918:SF31 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000294E877 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_006358847.1 | SEG:seg | : |
Description
Cell cycle switch 52A [Source:PGSC_GENE;Acc:PGSC0003DMG400022734]
Coordinates
chr8:+:53754212..53758588
Molecular Weight (calculated)
52621.8 Da
IEP (calculated)
9.227
GRAVY (calculated)
-0.389
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSSVNPLS SSSDLNPKTP SRTNQLIPGF NSYHPSPSRT IYSDRFIPSR SSSNFALFDL PLPPQSSSSE DSTNAYTALL RSALFGTDCG SVVPPVTPDK
101: SSGLNARNLQ ICRPNCNIFR YKTETRQSLQ SLSPFGFDDQ LPGFSPSPVK ANRKVPRSPF KVLDAPALQD DFYLNLVDWS SHNVLAVGLG SCVYLWHASS
201: SKVVKLCDLG IDDSVSSVGW AQRGTHLAVG TSNGKVQLWD SSRCKRIRTM EGHRLRVGAL AWSSSMLSSG SRDKSILQRD IRAQEDFVSK LSGHKSEVCG
301: LKWSYDNREL ASGGNDNRLF VWNNHSTQPV LKYCEHTAAV KAIAWSPHLH GLLASGGGTA DRCIRFWNTT TNTHLSCMDT GSQVCNLVWS KNVNELVSTH
401: GYSQNQIIVW RYPTMSKIAT LTGHTYRVLY LAISPDGQTI VTGAGDETLR FWNVFPSPKS KNTETEIGAS SFGRTQIR
101: SSGLNARNLQ ICRPNCNIFR YKTETRQSLQ SLSPFGFDDQ LPGFSPSPVK ANRKVPRSPF KVLDAPALQD DFYLNLVDWS SHNVLAVGLG SCVYLWHASS
201: SKVVKLCDLG IDDSVSSVGW AQRGTHLAVG TSNGKVQLWD SSRCKRIRTM EGHRLRVGAL AWSSSMLSSG SRDKSILQRD IRAQEDFVSK LSGHKSEVCG
301: LKWSYDNREL ASGGNDNRLF VWNNHSTQPV LKYCEHTAAV KAIAWSPHLH GLLASGGGTA DRCIRFWNTT TNTHLSCMDT GSQVCNLVWS KNVNELVSTH
401: GYSQNQIIVW RYPTMSKIAT LTGHTYRVLY LAISPDGQTI VTGAGDETLR FWNVFPSPKS KNTETEIGAS SFGRTQIR
001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR
Arabidopsis Description
FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.