Factsheet for PGSC0003DMT400027994

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006585
PGSC0003DMT400021687
PGSC0003DMT400036934
PGSC0003DMT400046928
PGSC0003DMT400047304
PGSC0003DMT400047444
PGSC0003DMT400049442
PGSC0003DMT400049444
PGSC0003DMT400060294
PGSC0003DMT400060963
PGSC0003DMT400062212
PGSC0003DMT400063189
PGSC0003DMT400066954
PGSC0003DMT400067201
PGSC0003DMT400078176
PGSC0003DMT400083452
PGSC0003DMT400085575

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22910.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT4G22910.1	PGSC0003DMT400047444	AT2G04660.1	20706207
AT4G22910.1	PGSC0003DMT400006585	AT2G20000.1	17944809
AT4G22910.1	PGSC0003DMT400083452	AT2G20000.1	17944809
AT4G22910.1	PGSC0003DMT400006585	AT2G20000.1	20706207
AT4G22910.1	PGSC0003DMT400083452	AT2G20000.1	20706207
AT4G22910.1	PGSC0003DMT400060963	AT2G42260.1	21798944
AT4G22910.1	PGSC0003DMT400067201	AT3G11830.1	20706207
AT4G22910.1	PGSC0003DMT400066954	AT3G20050.1	20706207
AT4G22910.1	PGSC0003DMT400063189	AT3G48150.1	20706207
AT4G22910.1	PGSC0003DMT400046928	AT3G56150.1	20706207
AT4G22910.1	PGSC0003DMT400078176	AT3G56150.1	20706207
AT4G22910.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT4G22910.1	PGSC0003DMT400047304	AT4G28230.1	20706207
AT4G22910.1	PGSC0003DMT400049442	AT5G02530.1	20706207
AT4G22910.1	PGSC0003DMT400049444	AT5G02530.1	20706207
AT4G22910.1	PGSC0003DMT400085575	AT5G02530.1	20706207
AT4G22910.1	PGSC0003DMT400036934	AT5G07310.1	20706207
AT4G22910.1	PGSC0003DMT400060294	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056490.1.1	Tomato	nucleus, plastid	96.5	97.51
PGSC0003DMT400058525	Potato	nucleus, plastid	80.45	81.8
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	72.22	77.65
KRH57275	Soybean	nucleus	71.19	75.38
Bra019347.1-P	Field mustard	nucleus, plastid	69.75	72.13
CDY10820	Canola	nucleus, plastid	69.55	71.91
Bra013655.1-P	Field mustard	nucleus, plastid	69.55	71.76
CDY41283	Canola	nucleus, plastid	69.55	71.76
KRH77460	Soybean	nucleus, plastid	67.49	71.46
AT4G22910.1	Thale cress	nucleus, plastid	70.99	71.43
GSMUA_Achr11P...	Banana	plastid	68.52	68.52
CDX94136	Canola	nucleus, plastid	53.5	68.06
KRH04001	Soybean	mitochondrion	72.43	66.92
Zm00001d027430_P001	Maize	plastid	68.11	64.4
Zm00001d048472_P001	Maize	nucleus, plastid	67.9	63.46
GSMUA_Achr11P...	Banana	plastid	63.58	62.93
KRH27985	Soybean	nucleus, plastid	58.02	62.11
TraesCS4B01G346200.2	Wheat	nucleus, plastid	65.02	61.6
TraesCS4D01G341200.1	Wheat	nucleus, plastid	64.81	61.52
Os03t0123300-01	Rice	plastid	65.43	60.8
TraesCS7B01G353500.1	Wheat	plastid	49.59	59.51
TraesCS1B01G166800.1	Wheat	cytosol	51.23	58.87
CDY71640	Canola	nucleus, plastid	27.78	56.25
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	65.02	56.13
PGSC0003DMT400076326	Potato	nucleus, plastid	56.38	54.58
OQU93351	Sorghum	nucleus	68.52	47.84
PGSC0003DMT400001467	Potato	nucleus	38.89	41.72
PGSC0003DMT400069533	Potato	nucleus, plastid	38.48	41.1
PGSC0003DMT400047585	Potato	nucleus	36.42	39.51
PGSC0003DMT400013474	Potato	cytosol	31.07	31.72

Protein Annotations

EntrezGene:102598464	MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1AQH4	PFAM:PF00400	PFAM:PF12894	EnsemblPlantsGene:PGSC0003DMG400010792
PGSC:PGSC0003DMG400010792	EnsemblPlants:PGSC0003DMT400027994	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294DF14	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006364132.1	SEG:seg	:

Description

Cell cycle switch 52A [Source:PGSC_GENE;Acc:PGSC0003DMG400010792]

Coordinates

chr12:-:54400397..54406461

Molecular Weight (calculated)

53751.9 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.577

Length

486 amino acids

Sequence
(BLAST)

001: MEHPSSNSTD PQTPFDPNSN FNPKTPSKTN NNNNNLIPGF NSYHPSPSRS IYSDRFIPSR TSSNFALFGL PLSPKSSNTE DSNNGYTSLL RTALFGPDSG
101: NVVNPVTPEK GVRGNGRNLK RPNCNIFRYK TETRQRLDSL LPFEFDDQIR GVSTSPVKVP RKVPKSPYKV LDAPALQDDF YLNLVDWSSQ NVLAVGLGSS
201: VYLWHASNGK VVKLCDLEND DNVTSVGWAQ RGTHLAVGTS NGKVQLWDTS HGKMTRTMEG HRLRVGALSW SSSQLSSGSR DKSILQRDIR AQEDYVSKLS
301: GHKSEVCGLK WSPDSRELAS GGNDNRIFVW NNHSTQPILK YCEHTAAVKA IAWSPHLHGL LASGGGTADR CIRFWNTTTN THLSCMDTGS QVCNLVWSKN
401: ANELVSTHGY SQNQIILWRY PTMTKIATLT GHTYRVLYLA ISPDGQMIVT GAGDETLRFW NVFPSPKSQN TESEIGASSL GRTQIR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.