CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72169
CDX73850
CDX74120
CDX74867
CDX79070
CDX79885
CDX80828
CDX82264
CDX82833
CDX89193
CDX96319
CDY01062
CDY03686
CDY03687
CDY04566
CDY04835
CDY06219
CDY06464
CDY06653
CDY08491
CDY09966
CDY10211
CDY10442
CDY14051
CDY15748
CDY16358
CDY18835
CDY18994
CDY24564
CDY25374
CDY27241
CDY30292
CDY30835
CDY33444
CDY34315
CDY35917
CDY36063
CDY36901
CDY37936
CDY37939
CDY40364
CDY40468
CDY42227
CDY44628
CDY44976
CDY49990
CDY53501
CDY53538
CDY53919
CDY55173
CDY55544
CDY58069
CDY58070
CDY60348
CDY60349
CDY65406
CDY66787
CDY67306
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22910.1	CDY06219	AT1G06590.1	20706207
AT4G22910.1	CDY06653	AT1G06590.1	20706207
AT4G22910.1	CDY09966	AT1G06590.1	20706207
AT4G22910.1	CDY10211	AT1G06590.1	20706207
AT4G22910.1	CDX96319	AT1G71380.1	20706207
AT4G22910.1	CDY03686	AT1G71380.1	20706207
AT4G22910.1	CDY03687	AT1G71380.1	20706207
AT4G22910.1	CDY37936	AT1G71380.1	20706207
AT4G22910.1	CDY37939	AT1G71380.1	20706207
AT4G22910.1	CDY66787	AT1G71380.1	20706207
AT4G22910.1	CDY04835	AT2G04660.1	20706207
AT4G22910.1	CDY30292	AT2G04660.1	20706207
AT4G22910.1	CDY30835	AT2G04660.1	20706207
AT4G22910.1	CDY35917	AT2G20000.1	17944809
AT4G22910.1	CDY40468	AT2G20000.1	17944809
AT4G22910.1	CDY35917	AT2G20000.1	20706207
AT4G22910.1	CDY40468	AT2G20000.1	20706207
AT4G22910.1	CDY04566	AT2G28450.1	20706207
AT4G22910.1	CDY15748	AT2G28450.1	20706207
AT4G22910.1	CDY60348	AT2G28450.1	20706207
AT4G22910.1	CDY60349	AT2G28450.1	20706207
AT4G22910.1	CDX74867	AT2G39090.1	20706207
AT4G22910.1	CDY06464	AT2G39090.1	20706207
AT4G22910.1	CDY44628	AT2G39090.1	20706207
AT4G22910.1	CDY53538	AT2G39090.1	20706207
AT4G22910.1	CDX79885	AT2G42260.1	21798944
AT4G22910.1	CDY53501	AT2G42260.1	21798944
AT4G22910.1	CDX73850	AT3G11830.1	20706207
AT4G22910.1	CDY01062	AT3G11830.1	20706207
AT4G22910.1	CDY08491	AT3G11830.1	20706207
AT4G22910.1	CDY53919	AT3G11830.1	20706207
AT4G22910.1	CDY67306	AT3G11830.1	20706207
AT4G22910.1	CDX82264	AT3G20050.1	20706207
AT4G22910.1	CDY24564	AT3G20050.1	20706207
AT4G22910.1	CDY25374	AT3G20050.1	20706207
AT4G22910.1	CDY33444	AT3G20050.1	20706207
AT4G22910.1	CDY36063	AT3G20050.1	20706207
AT4G22910.1	CDY42227	AT3G20050.1	20706207
AT4G22910.1	CDY36901	AT3G48150.1	20706207
AT4G22910.1	CDY44976	AT3G48150.1	20706207
AT4G22910.1	CDY58069	AT3G48150.1	20706207
AT4G22910.1	CDY58070	AT3G48150.1	20706207
AT4G22910.1	CDY70805	AT3G48150.1	20706207
AT4G22910.1	CDX72169	AT3G56150.1	20706207
AT4G22910.1	CDY16358	AT3G56150.1	20706207
AT4G22910.1	CDY27241	AT3G56150.1	20706207
AT4G22910.1	CDY65406	AT3G56150.1	20706207
AT4G22910.1	CDX79070	AT4G21530.1	20706207
AT4G22910.1	CDX82833	AT4G21530.1	20706207
AT4G22910.1	CDY34315	AT4G24820.1	20706207
AT4G22910.1	CDX89193	AT4G28230.1	20706207
AT4G22910.1	CDY18994	AT4G28230.1	20706207
AT4G22910.1	CDX80828	AT5G02530.1	20706207
AT4G22910.1	CDY10442	AT5G02530.1	20706207
AT4G22910.1	CDY40364	AT5G02530.1	20706207
AT4G22910.1	CDY55544	AT5G02530.1	20706207
AT4G22910.1	CDY14051	AT5G07310.1	20706207
AT4G22910.1	CDY55173	AT5G07310.1	20706207
AT4G22910.1	CDX74120	AT5G26360.1	20706207
AT4G22910.1	CDY18835	AT5G26360.1	20706207
AT4G22910.1	CDY49990	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013655.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY10820	Canola	nucleus, plastid	99.79	100.0
CDY71065	Canola	cytosol	21.02	96.12
AT4G22910.1	Thale cress	nucleus, plastid	92.78	90.48
CDX94136	Canola	nucleus, plastid	73.04	90.05
CDY71640	Canola	nucleus, plastid	43.31	85.0
CDX94473	Canola	nucleus	78.34	78.18
CDX86737	Canola	nucleus	78.56	77.89
CDX90811	Canola	nucleus	74.1	77.04
CDY51550	Canola	nucleus	73.89	76.65
PGSC0003DMT400058525	Potato	nucleus, plastid	74.95	73.85
Solyc08g080080.2.1	Tomato	nucleus, plastid	74.95	73.39
GSMUA_Achr11P...	Banana	plastid	74.1	71.81
Solyc12g056490.1.1	Tomato	nucleus, plastid	71.34	69.85
PGSC0003DMT400027994	Potato	nucleus, plastid	71.76	69.55
Zm00001d027430_P001	Maize	plastid	72.19	66.15
Zm00001d048472_P001	Maize	nucleus, plastid	71.76	65.0
GSMUA_Achr11P...	Banana	plastid	67.73	64.97
TraesCS4D01G341200.1	Wheat	nucleus, plastid	69.64	64.06
TraesCS4B01G346200.2	Wheat	nucleus, plastid	69.64	63.94
Os03t0123300-01	Rice	plastid	70.06	63.1
TraesCS1B01G166800.1	Wheat	cytosol	55.41	61.7
TraesCS7B01G353500.1	Wheat	plastid	52.87	61.48
CDX70523	Canola	plastid	60.08	60.47
CDX78541	Canola	plastid	59.87	60.26
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	69.21	57.9
OQU93351	Sorghum	nucleus	72.4	48.99
CDY26774	Canola	mitochondrion	11.25	48.18
CDY59111	Canola	nucleus	22.08	48.15
CDY04804	Canola	mitochondrion, plastid	16.14	47.5
CDY13491	Canola	cytosol	32.91	42.12
CDY71694	Canola	nucleus	14.86	40.46
CDX75343	Canola	nucleus	31.85	40.21
CDY52543	Canola	nucleus	34.82	38.32
CDY59110	Canola	nucleus	33.97	38.19
CDY59109	Canola	nucleus	33.97	38.19
CDX68960	Canola	nucleus	33.33	38.01
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	15.5	37.82
CDY44519	Canola	cytosol, nucleus	36.09	32.76
CDX98239	Canola	nucleus	7.64	26.87
CDY46124	Canola	cytosol	31.21	23.71
CDY28290	Canola	cytosol, mitochondrion, nucleus	6.79	21.92
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	UniProt:A0A078HWZ1	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY41283	ProteinID:CDY41283
ProteinID:CDY41283.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0051488	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00072710001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025458FC	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA01g12560DBnaA01g12560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWZ1]

Coordinates

chrLK032494:-:203440..205764

Molecular Weight (calculated)

51472.4 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.336

Length

471 amino acids

Sequence
(BLAST)

001: MEDPTASNVT PPANSSSQII IPSPSSVKVS LESRINRLIN ANQSPSPSRS IYSDRFIPSR SGSNFALFDL ASPSPSKEDG AGSYATLLRA AMFGPETPEK
101: RDITGFSTSR NIFRFKTETN RCLNSFSPFV SDDGPGVSHA PIKALRKVSR SPYKVLDAPA LQDDFYLNLV DWSAQNVLAV GLGNCVYLWN ACSSKVTKLC
201: DLGADDSVCS VGWAFRGTHL AVGTSSGKVQ IWDASRCKRT RTMEGHRLRV GALAWGSSVL SSGSRDKSIL QRDIRCQEDH VSKLAGHKSE VCGLKWSYDN
301: RELASGGNDN RLFVWNQHST QPVLKYSEHT AAVKAIAWSP HVHGLLASGG GTADRCIRFW NTTTNTHLSS IDTCSQVCNL AWSKNVNELV STHGYSQNQI
401: IVWKYPTMSK IATLTGHTYR VLYLAVSPDG QTIVTGAGDE TLRFWNVFPS PKSQNTDSDI GSSFFGRTTI R

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.