Factsheet for Solyc08g080080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067490.2.1
Solyc01g090750.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc03g118190.2.1
Solyc05g007750.2.1
Solyc05g056310.2.1
Solyc06g065520.2.1
Solyc06g076150.2.1
Solyc07g009140.2.1
Solyc07g054690.1.1
Solyc08g067190.2.1
Solyc10g080400.1.1
Solyc10g086400.1.1
Solyc11g040340.1.1
Solyc11g069340.1.1
Solyc11g073280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22910.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT4G22910.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT4G22910.1	Solyc05g007750.2.1	AT2G04660.1	20706207
AT4G22910.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT4G22910.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT4G22910.1	Solyc11g069340.1.1	AT2G28450.1	20706207
AT4G22910.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT4G22910.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT4G22910.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT4G22910.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT4G22910.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT4G22910.1	Solyc01g102560.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102570.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102590.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102600.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc06g076150.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT4G22910.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT4G22910.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT4G22910.1	Solyc10g086400.1.1	AT5G02530.1	20706207
AT4G22910.1	Solyc11g073280.1.1	AT5G02530.1	20706207
AT4G22910.1	Solyc03g118190.2.1	AT5G07310.1	20706207
AT4G22910.1	Solyc05g056310.2.1	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058525	Potato	nucleus, plastid	98.54	99.16
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	77.96	82.96
KRH57275	Soybean	nucleus	77.13	80.83
Solyc12g056490.1.1	Tomato	nucleus, plastid	80.25	80.25
KRH77460	Soybean	nucleus, plastid	71.93	75.38
CDY10820	Canola	nucleus, plastid	73.39	75.11
Bra013655.1-P	Field mustard	nucleus, plastid	73.39	74.95
CDY41283	Canola	nucleus, plastid	73.39	74.95
Bra019347.1-P	Field mustard	nucleus, plastid	72.97	74.68
AT4G22910.1	Thale cress	nucleus, plastid	74.64	74.33
GSMUA_Achr11P...	Banana	plastid	73.39	72.63
KRH04001	Soybean	mitochondrion	77.96	71.29
CDX94136	Canola	nucleus, plastid	55.51	69.9
GSMUA_Achr11P...	Banana	plastid	68.4	67.01
KRH27985	Soybean	nucleus, plastid	62.99	66.74
Zm00001d048472_P001	Maize	nucleus, plastid	71.52	66.15
Zm00001d027430_P001	Maize	plastid	70.69	66.15
TraesCS4D01G341200.1	Wheat	nucleus, plastid	68.19	64.06
TraesCS4B01G346200.2	Wheat	nucleus, plastid	68.19	63.94
Os03t0123300-01	Rice	plastid	69.02	63.48
TraesCS1B01G166800.1	Wheat	cytosol	54.68	62.17
TraesCS7B01G353500.1	Wheat	plastid	52.18	61.98
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	68.81	58.79
CDY71640	Canola	nucleus, plastid	28.27	56.67
Solyc06g043150.2.1	Tomato	nucleus, plastid	58.0	55.91
OQU93351	Sorghum	nucleus	71.73	49.57
Solyc03g096870.2.1	Tomato	nucleus	39.92	42.38
Solyc06g072830.2.1	Tomato	nucleus, plastid	38.67	40.88
Solyc08g005420.2.1	Tomato	nucleus	36.8	39.51
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	30.77	32.17

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4CP08	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc08g080080.2
EnsemblPlants:Solyc08g080080.2.1	UniParc:UPI0001C23695	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:63408341..63412537

Molecular Weight (calculated)

52971.3 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.388

Length

481 amino acids

Sequence
(BLAST)

001: MENSSVNPQN PISSSSDLNP KTPSRTNQLI PGFNSYHPSP SRTIYSDRFI PSRSSSNFAL FDLPLPPQSS SSEDSTNAYT ALLRSALFGA DCGSVVPPVT
101: PDKSLGLNAR NLQICRPNCN IFRYKTETRQ SLQSLSPFGF EDQLPGFSPS PVKANRKVPR SPFKVLDAPA LQDDFYLNLV DWSSHNVLAV GLGSCVYLWH
201: ASSSKVVKLC DLGIDDSVSS VGWAQRGTHL AVGTSNGKVQ LWDSSRCKRI RTMEGHRLRV GALAWSSSML SSGSRDKSIL QRDIRAQEDF VSKLSGHKSE
301: VCGLKWSYDN RELASGGNDN RLFVWNNHST QPVLKYCEHT AAVKAIAWSP HLHGLLASGG GTADRCIRFW NTTTNTHLSC MDTGSQVCNL VWSKNVNELV
401: STHGYSQNQI IVWRYPTMSK IATLTGHTYR VLYLAISPDG QTIVTGAGDE TLRFWNVFPS PKSKNTETEI GASSFGRTQI R

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.