Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
KRG92501 | |
KRG95339 | |
KRG96284 | |
KRG97883 | |
KRG99106 | |
KRH01617 | |
KRH03906 | |
KRH05109 | |
KRH07006 | |
KRH08242 | |
KRH09301 | |
KRH11210 | |
KRH14509 | |
KRH16010 | |
KRH21040 | |
KRH23040 | |
KRH24006 | |
KRH24828 | |
KRH25124 | |
KRH26168 | |
KRH27971 | |
KRH28989 | |
KRH29310 | |
KRH29829 | |
KRH30550 | |
KRH30995 | |
KRH32716 | |
KRH32877 | |
KRH38791 | |
KRH41728 | |
KRH42973 | |
KRH49548 | |
KRH49954 | |
KRH51329 | endoplasmic reticulum |
KRH52488 | |
KRH52489 | |
KRH54084 | |
KRH55075 | |
KRH57185 | |
KRH57190 | |
KRH59103 | |
KRH60628 | endoplasmic reticulum |
KRH63877 | |
KRH63879 | |
KRH67023 | |
KRH68026 | |
KRH69898 | |
KRH70494 | |
KRH72142 | |
KRH73622 | |
KRH74904 | |
KRH75241 | |
KRH76467 | |
KRH77487 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH04001 | Soybean | mitochondrion | 96.51 | 84.22 |
VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 81.92 | 83.19 |
PGSC0003DMT400058525 | Potato | nucleus, plastid | 81.05 | 77.82 |
KRH77460 | Soybean | nucleus, plastid | 77.56 | 77.56 |
Solyc08g080080.2.1 | Tomato | nucleus, plastid | 80.83 | 77.13 |
AT4G11920.1 | Thale cress | nucleus | 75.38 | 72.84 |
GSMUA_Achr11P... | Banana | plastid | 76.69 | 72.43 |
CDX94473 | Canola | nucleus | 74.29 | 72.25 |
Solyc12g056490.1.1 | Tomato | nucleus, plastid | 75.38 | 71.93 |
Bra000756.1-P | Field mustard | nucleus | 72.98 | 71.28 |
PGSC0003DMT400027994 | Potato | nucleus, plastid | 75.38 | 71.19 |
CDX86737 | Canola | nucleus | 73.64 | 71.16 |
Bra029426.1-P | Field mustard | nucleus | 73.64 | 71.16 |
CDY51550 | Canola | nucleus | 69.5 | 70.26 |
CDX90811 | Canola | nucleus | 69.28 | 70.2 |
Zm00001d027430_P001 | Maize | plastid | 75.16 | 67.12 |
KRH27985 | Soybean | nucleus, plastid | 65.8 | 66.52 |
GSMUA_Achr11P... | Banana | plastid | 70.81 | 66.19 |
Zm00001d048472_P001 | Maize | nucleus, plastid | 74.95 | 66.15 |
TraesCS4D01G341200.1 | Wheat | nucleus, plastid | 72.77 | 65.23 |
TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 72.77 | 65.11 |
Os03t0123300-01 | Rice | plastid | 72.98 | 64.05 |
TraesCS7B01G353500.1 | Wheat | plastid | 55.34 | 62.72 |
TraesCS1B01G166800.1 | Wheat | cytosol | 57.73 | 62.65 |
HORVU4Hr1G084710.1 | Barley | cytosol, mitochondrion | 72.77 | 59.33 |
KRG97899 | Soybean | plastid | 61.0 | 57.26 |
KRH30985 | Soybean | plastid | 60.57 | 55.6 |
OQU93351 | Sorghum | nucleus | 75.38 | 49.71 |
KRH27762 | Soybean | nucleus | 41.61 | 41.98 |
KRH77717 | Soybean | nucleus | 41.18 | 41.54 |
KRH44738 | Soybean | nucleus | 37.91 | 39.37 |
KRH70386 | Soybean | cytosol | 24.62 | 39.1 |
KRH68047 | Soybean | nucleus | 38.78 | 38.95 |
KRG94456 | Soybean | cytosol | 18.95 | 37.02 |
KRH33341 | Soybean | nucleus | 34.2 | 34.73 |
KRH08491 | Soybean | cytosol | 9.8 | 32.14 |
KRH07005 | Soybean | nucleus | 7.63 | 28.23 |
Protein Annotations
EntrezGene:100800467 | MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | EMBL:ACUP02002823 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy |
EnsemblPlantsGene:GLYMA_05G051100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 |
GO:GO:1904668 | UniProt:I1K0F5 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH57275 |
ProteinID:KRH57275 | ProteinID:KRH57275.1 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 | PFscan:PS50082 |
PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF31 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000233A111 |
InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:-:4570685..4577026
Molecular Weight (calculated)
50599.7 Da
IEP (calculated)
8.841
GRAVY (calculated)
-0.329
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSGHLNI PPAAAAATLR HVDRMINSNH YTSPSRTIYS DRFIPSRSAS KFALFDIAWP PGGGDDSSSA YTTLLRTALF GPDIEPPHSP AMTLPSRNIF
101: RYKTETRQSM HSHSPFLCDD SVPGVVHGPV KAPRKVPRSP FKVLDAPALQ DDFYLNLVDW SSHNVLAVGL GNCVYLWNAC SSKVTKLCDL GIDDLVCSVG
201: WAQRGTHLAV GTSNGKVQIW DASRCKKIRS MEGHRLRVGT LAWSSSLLSS GGRDKNIYQR DIRAQEDFVS KLSGHKSEVC GLKWSYDNRE LASGGNDNRL
301: FVWNQHSTQP VLKYCEHTAA VKAIAWSPHL HGLLASGGGT ADRCIRFWNT TTNSHLSCMD TGSQVCNLVW SKNVNELVST HGYSQNQIIV WRYPSMSKLA
401: TLTGHTYRVL YLAISPDGQT IVTGAGDETL RFWNVFPSPK SQNTDSEIGA SSFGRTIIR
101: RYKTETRQSM HSHSPFLCDD SVPGVVHGPV KAPRKVPRSP FKVLDAPALQ DDFYLNLVDW SSHNVLAVGL GNCVYLWNAC SSKVTKLCDL GIDDLVCSVG
201: WAQRGTHLAV GTSNGKVQIW DASRCKKIRS MEGHRLRVGT LAWSSSLLSS GGRDKNIYQR DIRAQEDFVS KLSGHKSEVC GLKWSYDNRE LASGGNDNRL
301: FVWNQHSTQP VLKYCEHTAA VKAIAWSPHL HGLLASGGGT ADRCIRFWNT TTNSHLSCMD TGSQVCNLVW SKNVNELVST HGYSQNQIIV WRYPSMSKLA
401: TLTGHTYRVL YLAISPDGQT IVTGAGDETL RFWNVFPSPK SQNTDSEIGA SSFGRTIIR
001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR
Arabidopsis Description
FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.