CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92463
EER92655
EER95064
EER95202
EER98238
EES01718
EES02737
EES04545
EES05908
EES05938
EES06225
EES07517
EES10334
EES11052
EES11053
EES11054
EES12225
EES12664	endoplasmic reticulum
EES13928
EES17614
EES18923
EES19889
KXG20781
KXG20945	endoplasmic reticulum
KXG21309
KXG24034
KXG26586
KXG26629
KXG26630
KXG29757
KXG33895
KXG35906
KXG37933
KXG40187
OQU75650
OQU81862
OQU85258
OQU87155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11920.1	EES02737	AT1G06590.1	20706207
AT4G11920.1	EES12664	AT1G20610.1	20407024
AT4G11920.1	KXG20945	AT1G20610.1	20407024
AT4G11920.1	EES06225	AT1G31760.1	20706207
AT4G11920.1	EER95202	AT1G78770.1	20706207
AT4G11920.1	KXG20781	AT2G04660.1	20706207
AT4G11920.1	EES19889	AT2G18290.1	20706207
AT4G11920.1	KXG33895	AT2G20000.1	17944809
AT4G11920.1	KXG33895	AT2G20000.1	20706207
AT4G11920.1	KXG40187	AT2G27970.1	20706207
AT4G11920.1	KXG21309	AT2G39090.1	20706207
AT4G11920.1	KXG24034	AT3G11760.1	20706207
AT4G11920.1	KXG37933	AT3G11760.1	20706207
AT4G11920.1	EES05938	AT3G20050.1	20706207
AT4G11920.1	EES07517	AT3G48150.1	20706207
AT4G11920.1	EER95064	AT3G55130.1	20706207
AT4G11920.1	EES01718	AT3G55130.1	20706207
AT4G11920.1	EES17614	AT3G55130.1	20706207
AT4G11920.1	EES18923	AT3G55130.1	20706207
AT4G11920.1	EES05908	AT4G21530.1	20706207
AT4G11920.1	KXG26586	AT4G24820.1	20706207
AT4G11920.1	OQU85258	AT4G24820.1	20706207
AT4G11920.1	EER92463	AT5G02530.1	20706207
AT4G11920.1	EER98238	AT5G02530.1	20706207
AT4G11920.1	OQU75650	AT5G02530.1	20706207
AT4G11920.1	EES11052	AT5G25460.1	20706207
AT4G11920.1	EES11053	AT5G25460.1	20706207
AT4G11920.1	EES11054	AT5G25460.1	20706207
AT4G11920.1	KXG26629	AT5G25460.1	20706207
AT4G11920.1	KXG26630	AT5G25460.1	20706207
AT4G11920.1	KXG29757	AT5G25460.1	20706207
AT4G11920.1	OQU81862	AT5G25460.1	20706207
AT4G11920.1	OQU87155	AT5G25460.1	20706207
AT4G11920.1	EER92655	AT5G26360.1	20706207
AT4G22910.1	EES02737	AT1G06590.1	20706207
AT4G22910.1	EES12225	AT1G71380.1	20706207
AT4G22910.1	KXG20781	AT2G04660.1	20706207
AT4G22910.1	KXG33895	AT2G20000.1	17944809
AT4G22910.1	KXG33895	AT2G20000.1	20706207
AT4G22910.1	EES10334	AT2G28450.1	20706207
AT4G22910.1	KXG21309	AT2G39090.1	20706207
AT4G22910.1	EES04545	AT3G11830.1	20706207
AT4G22910.1	EES05938	AT3G20050.1	20706207
AT4G22910.1	EES07517	AT3G48150.1	20706207
AT4G22910.1	EES13928	AT3G56150.1	20706207
AT4G22910.1	KXG35906	AT3G56150.1	20706207
AT4G22910.1	EES05908	AT4G21530.1	20706207
AT4G22910.1	KXG26586	AT4G24820.1	20706207
AT4G22910.1	OQU85258	AT4G24820.1	20706207
AT4G22910.1	EER92463	AT5G02530.1	20706207
AT4G22910.1	EER98238	AT5G02530.1	20706207
AT4G22910.1	OQU75650	AT5G02530.1	20706207
AT4G22910.1	EER92655	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048472_P001	Maize	nucleus, plastid	70.4	94.23
Zm00001d027430_P001	Maize	plastid	69.54	94.16
Os03t0123300-01	Rice	plastid	64.94	86.42
TraesCS4D01G341200.1	Wheat	nucleus, plastid	62.07	84.38
TraesCS4B01G346200.2	Wheat	nucleus, plastid	61.64	83.63
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	63.07	77.98
KRH57275	Soybean	nucleus	49.71	75.38
GSMUA_Achr11P...	Banana	plastid	52.59	75.31
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	48.85	75.22
TraesCS1B01G166800.1	Wheat	cytosol	45.69	75.18
TraesCS7B01G353500.1	Wheat	plastid	43.25	74.32
Bra019347.1-P	Field mustard	nucleus, plastid	49.28	72.98
CDY10820	Canola	nucleus, plastid	48.99	72.55
CDY41283	Canola	nucleus, plastid	48.99	72.4
Bra013655.1-P	Field mustard	nucleus, plastid	48.99	72.4
PGSC0003DMT400058525	Potato	nucleus, plastid	49.71	72.38
AT4G22910.1	Thale cress	nucleus, plastid	49.86	71.84
Solyc08g080080.2.1	Tomato	nucleus, plastid	49.57	71.73
KRH77460	Soybean	nucleus, plastid	46.98	71.24
AT4G11920.1	Thale cress	nucleus	47.84	70.11
CDX94473	Canola	nucleus	47.41	69.92
Bra029426.1-P	Field mustard	nucleus	47.41	69.47
CDX86737	Canola	nucleus	47.41	69.47
Solyc12g056490.1.1	Tomato	nucleus, plastid	47.99	69.44
PGSC0003DMT400027994	Potato	nucleus, plastid	47.84	68.52
Bra000756.1-P	Field mustard	nucleus	46.12	68.3
KRH04001	Soybean	mitochondrion	51.58	68.25
GSMUA_Achr11P...	Banana	plastid	47.84	67.82
CDX94136	Canola	nucleus, plastid	37.21	67.8
CDY51550	Canola	nucleus	44.11	67.62
CDX90811	Canola	nucleus	43.68	67.11
KRH27985	Soybean	nucleus, plastid	40.66	62.33
EES02145	Sorghum	plastid	42.1	60.79
CDY71640	Canola	nucleus, plastid	18.82	54.58
OQU82251	Sorghum	cytosol	11.93	47.43
KXG30937	Sorghum	nucleus	27.16	40.13
EES06634	Sorghum	nucleus	27.01	39.58
KXG27036	Sorghum	cytosol	9.77	37.57

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	Gene3D:3.30.70.330	UniProt:A0A1Z5SBP2	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	InterPro:IPR000504	InterPro:IPR001680	InterPro:IPR012677	InterPro:IPR015943
InterPro:IPR017986	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU93351	ProteinID:OQU93351	ProteinID:OQU93351.1	PFAM:PF00076
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50102	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	InterPro:Quinoprotein_ADH-like_supfam	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00320
SMART:SM00360	EnsemblPlantsGene:SORBI_3001G526300	SUPFAM:SSF50998	SUPFAM:SSF54928	UniParc:UPI000B8BA571	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:79038519..79048737

Molecular Weight (calculated)

75714.8 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.527

Length

696 amino acids

Sequence
(BLAST)

001: MRVERCRVTA TSNKKRKAEF QTDPKKSEGC LSAYVGNLSW NVTEKDLRDF FRSSKIASVR FAIDKRTGGS RGFCHVDFQD DESLEKAVAM NQSELQGETK
101: ARFVPRIKEK AKGGWSKKKR LVEITPRGRI EQDEEEDREK ARGRERKQAL VIHPPRRTRT ASPPIPNSSH SPRPSPPMDH HLTPSPPSPM ENSAAGPSSK
201: PPTPASTPNS RLASAPSSRH SATTSHASAP SSAPTPASRT VYSDRFIPSR TGSNLALFDL APSPSAASSS HEGGPAVSSG SATAASPYCA LLRAALFGPD
301: TPDRVASSAT ACSSSSSPGP SPVGTPATGN IFRFKTEVRR SAKRALFSGE EEEDALFPGI FTTRGAGPRK VPRSPYKVLD APALQDDFYL NLVDWSSHNV
401: LAVGLGNCVY LWNACSSKVT KLCDLGVDDN VCSVGWAQRG THLAVGTNQG KVQIWDATRC KRIRTMESHR MRVGALAWSS SLLSSGSRDK SILHHDIRAQ
501: EDYVSKLTGH KSEVCGLKWS YDNRQLASGG NDNRLFVWNP HSVQPVLKYT EHTAAVKAIA WSPHLHGLLA SGGGTADRCI RFWNTTTNTN LSCVDTGSQV
601: CNLAWSKNVN ELVSTHGYSQ NQIIVWRYPT MSKLATLTGH TYRVLYLAIS PDGQTIVTGA GDETLRFWNV FPSPKSQSSD SLSCIGGTSF VRSYIR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.