Factsheet for Bra029426.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001174.1-P
Bra001773.1-P
Bra005063.1-P
Bra005728.1-P
Bra007362.1-P
Bra009581.1-P
Bra009841.1-P
Bra013534.1-P
Bra013838.1-P
Bra014773.1-P
Bra014774.1-P
Bra015512.1-P
Bra016460.1-P	endoplasmic reticulum
Bra018081.1-P
Bra020500.1-P
Bra023201.1-P
Bra024475.1-P
Bra025616.1-P
Bra025831.1-P	endoplasmic reticulum
Bra028703.1-P
Bra028905.1-P
Bra032414.1-P
Bra033769.1-P
Bra033879.1-P
Bra034380.1-P
Bra035062.1-P
Bra035353.1-P
Bra035820.1-P
Bra038252.1-P
Bra038679.1-P
Bra039034.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11920.1	Bra015512.1-P	AT1G06590.1	20706207
AT4G11920.1	Bra032414.1-P	AT1G06590.1	20706207
AT4G11920.1	Bra016460.1-P	AT1G20610.1	20407024
AT4G11920.1	Bra025831.1-P	AT1G20610.1	20407024
AT4G11920.1	Bra023201.1-P	AT1G31760.1	20706207
AT4G11920.1	Bra033879.1-P	AT1G31760.1	20706207
AT4G11920.1	Bra035062.1-P	AT1G78770.1	20706207
AT4G11920.1	Bra025616.1-P	AT2G04660.1	20706207
AT4G11920.1	Bra028905.1-P	AT2G04660.1	20706207
AT4G11920.1	Bra024475.1-P	AT2G18290.1	20706207
AT4G11920.1	Bra039034.1-P	AT2G20000.1	17944809
AT4G11920.1	Bra039034.1-P	AT2G20000.1	20706207
AT4G11920.1	Bra034380.1-P	AT2G27970.1	20706207
AT4G11920.1	Bra005063.1-P	AT2G39090.1	20706207
AT4G11920.1	Bra038679.1-P	AT3G11760.1	20706207
AT4G11920.1	Bra001773.1-P	AT3G20050.1	20706207
AT4G11920.1	Bra035820.1-P	AT3G20050.1	20706207
AT4G11920.1	Bra038252.1-P	AT3G20050.1	20706207
AT4G11920.1	Bra018081.1-P	AT3G48150.1	20706207
AT4G11920.1	Bra033769.1-P	AT3G48150.1	20706207
AT4G11920.1	Bra014773.1-P	AT3G55130.1	20706207
AT4G11920.1	Bra014774.1-P	AT3G55130.1	20706207
AT4G11920.1	Bra035353.1-P	AT3G55130.1	20706207
AT4G11920.1	Bra007362.1-P	AT3G57860.1	20706207
AT4G11920.1	Bra013534.1-P	AT4G21530.1	20706207
AT4G11920.1	Bra013838.1-P	AT4G24820.1	20706207
AT4G11920.1	Bra005728.1-P	AT5G02530.1	20706207
AT4G11920.1	Bra009581.1-P	AT5G02530.1	20706207
AT4G11920.1	Bra028703.1-P	AT5G07310.1	20706207
AT4G11920.1	Bra009841.1-P	AT5G25460.1	20706207
AT4G11920.1	Bra020500.1-P	AT5G25460.1	20706207
AT4G11920.1	Bra001174.1-P	AT5G26360.1	20706207
AT4G11920.1	Bra040242.1-P	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86737	Canola	nucleus	100.0	100.0
Bra000756.1-P	Field mustard	nucleus	89.89	90.85
AT4G11920.1	Thale cress	nucleus	85.05	85.05
Bra013655.1-P	Field mustard	nucleus, plastid	77.89	78.56
Bra019347.1-P	Field mustard	nucleus, plastid	77.26	78.09
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	71.16	74.78
KRH57275	Soybean	nucleus	71.16	73.64
KRH77460	Soybean	nucleus, plastid	68.84	71.24
GSMUA_Achr11P...	Banana	plastid	69.05	67.49
KRH04001	Soybean	mitochondrion	71.58	64.64
Zm00001d027430_P001	Maize	plastid	68.63	63.42
KRH27985	Soybean	nucleus, plastid	60.21	63.0
Zm00001d048472_P001	Maize	nucleus, plastid	68.84	62.88
TraesCS4B01G346200.2	Wheat	nucleus, plastid	67.79	62.77
TraesCS4D01G341200.1	Wheat	nucleus, plastid	67.58	62.7
GSMUA_Achr11P...	Banana	plastid	64.42	62.32
Os03t0123300-01	Rice	plastid	67.37	61.19
TraesCS1B01G166800.1	Wheat	cytosol	53.47	60.05
TraesCS7B01G353500.1	Wheat	plastid	51.16	60.0
Bra006219.1-P	Field mustard	plastid	59.58	58.23
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	68.21	57.55
OQU93351	Sorghum	nucleus	69.47	47.41
Bra008327.1-P	Field mustard	cytosol, mitochondrion	37.05	41.12
Bra005544.1-P	Field mustard	nucleus	37.26	40.32
Bra034555.1-P	Field mustard	nucleus	31.16	39.05
Bra037011.1-P	Field mustard	nucleus	34.32	38.9
Bra011430.1-P	Field mustard	cytosol	38.32	25.45

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra029426	EnsemblPlants:Bra029426.1	EnsemblPlants:Bra029426.1-P
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027
GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EKV9	PFAM:PF00400
PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025427F4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G11920 (E=2e-218) CCS52A2, FZR1 | CCS52A2; signal transducer

Coordinates

chrA09:+:18180968..18183510

Molecular Weight (calculated)

52188.7 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.392

Length

475 amino acids

Sequence
(BLAST)

001: MEVDGEDPPK KPSSSSQLNL PPSMNRPTVS LETQRINRLI DSNHYHSPSK PIYSDRFIPS RSGSNFALFG LEPSPGKEDG PGSYAGMLRA AMFEPDTPEK
101: GDVVTGFSPS RKMFRYKTET QRPVNSFSPL GGAGDDEAPG VSRSPVKPTR NILKSAYKVL DAPALQDDFY LNLVDWSAQN VLAVGLANCV YLWNACTSKV
201: TKLCDIGVDE SVCSVSWALR GTHLAIGTSS GTVEIWDALR CKRIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRC QEDHVSKLTG HKSEVCGLKW
301: SYDNRELASG GNDNKLLVWN QHSTQPVLRY CEHTAAVKAI AWSPHLHGLL ASGGGTADRC IRFWNTTTNT SLNCVDTTSQ VCNLAWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HTFRVLYLAV SPDGQTIVTG AGDETLRFWN IFPSPKSQSR ESKIGALSFG RTTIR

Best Arabidopsis Sequence Match ( AT4G11920.1 )
(BLAST)

001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR

Arabidopsis Description

FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.