Factsheet for Bra024475.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001110.1-P
Bra004677.1-P
Bra005063.1-P
Bra006219.1-P
Bra007220.1-P
Bra007362.1-P
Bra010457.1-P
Bra012553.1-P
Bra013385.1-P
Bra013534.1-P
Bra013899.1-P
Bra015512.1-P
Bra018036.1-P
Bra018081.1-P
Bra019155.1-P
Bra020966.1-P
Bra022520.1-P
Bra025616.1-P
Bra027173.1-P
Bra028905.1-P
Bra029917.1-P
Bra032414.1-P
Bra033769.1-P
Bra035062.1-P
Bra039034.1-P
Bra040393.1-P
Bra040769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	Bra015512.1-P	AT1G06590.1	20706207
AT2G18290.1	Bra032414.1-P	AT1G06590.1	20706207
AT2G18290.1	Bra040769.1-P	AT1G32310.1	20706207
AT2G18290.1	Bra035062.1-P	AT1G78770.1	20706207
AT2G18290.1	Bra025616.1-P	AT2G04660.1	20706207
AT2G18290.1	Bra028905.1-P	AT2G04660.1	20706207
AT2G18290.1	Bra039034.1-P	AT2G20000.1	17944809
AT2G18290.1	Bra039034.1-P	AT2G20000.1	20706207
AT2G18290.1	Bra005063.1-P	AT2G39090.1	20706207
AT2G18290.1	Bra004677.1-P	AT2G42260.1	20706207
AT2G18290.1	Bra001110.1-P	AT3G04620.1	20706207
AT2G18290.1	Bra040393.1-P	AT3G04620.1	20706207
AT2G18290.1	Bra027173.1-P	AT3G16320.1	17944809
AT2G18290.1	Bra027173.1-P	AT3G16320.1	20706207
AT2G18290.1	Bra018081.1-P	AT3G48150.1	20706207
AT2G18290.1	Bra033769.1-P	AT3G48150.1	20706207
AT2G18290.1	Bra018036.1-P	AT3G48750.1	20706207
AT2G18290.1	Bra029917.1-P	AT3G48750.1	20706207
AT2G18290.1	Bra007220.1-P	AT3G56150.1	20706207
AT2G18290.1	Bra022520.1-P	AT3G56150.1	20706207
AT2G18290.1	Bra007362.1-P	AT3G57860.1	20706207
AT2G18290.1	Bra012553.1-P	AT4G19210.1	20706207
AT2G18290.1	Bra013385.1-P	AT4G19210.1	20706207
AT2G18290.1	Bra020966.1-P	AT4G19210.1	20706207
AT2G18290.1	Bra013534.1-P	AT4G21530.1	20706207
AT2G18290.1	Bra010457.1-P	AT4G25550.1	20706207
AT2G18290.1	Bra013899.1-P	AT4G25550.1	20706207
AT2G18290.1	Bra019155.1-P	AT4G25550.1	20706207
AT2G18290.1	Bra006219.1-P	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20922	Canola	cytosol	99.48	99.48
CDY29224	Canola	cytosol	99.48	99.48
AT2G18290.1	Thale cress	nucleus	92.19	92.19
KRH08242	Soybean	cytosol	83.85	83.85
VIT_04s0023g01940.t01	Wine grape	cytosol	83.33	83.33
PGSC0003DMT400040024	Potato	cytosol	82.81	83.25
KRH69898	Soybean	cytosol	82.81	82.81
Solyc02g062680.2.1	Tomato	cytosol	82.29	82.72
GSMUA_Achr1P03050_001	Banana	cytosol	79.17	77.95
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	77.6	74.13
Os05t0579800-01	Rice	cytosol	77.08	73.63
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	77.08	73.63
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	73.44	71.21
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	76.56	64.47
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	27.6	49.53
KRG99106	Soybean	nucleus	28.65	45.08
TraesCS5A01G358300.1	Wheat	nucleus	27.6	35.1
TraesCS6A01G073800.1	Wheat	nucleus	27.6	35.1
TraesCS7A01G155100.1	Wheat	nucleus	27.6	35.1
TraesCS1D01G323600.1	Wheat	nucleus	27.08	34.44
TraesCS3B01G195200.1	Wheat	nucleus	26.04	33.11
KRH49548	Soybean	mitochondrion, plastid	25.0	26.97

Protein Annotations

MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom	EnsemblPlantsGene:Bra024475	EnsemblPlants:Bra024475.1
EnsemblPlants:Bra024475.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005680	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604
GO:GO:0019538	GO:GO:0031145	GO:GO:0032875	GO:GO:0032876	GO:GO:0051301	InterPro:Galactose-bd-like_sf
InterPro:IPR004939	InterPro:IPR008979	UniProt:M4E6S0	PFAM:PF03256	PIRSF:PIRSF028841	PFscan:PS51284
PANTHER:PTHR12936	SMART:SM01337	SUPFAM:SSF49785	UniParc:UPI000253EF91	:	:

Description

AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family

Coordinates

chrA06:+:16012889..16014507

Molecular Weight (calculated)

21719.7 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.543

Length

192 amino acids

Sequence
(BLAST)

001: MATESSESEE EGKIRGGNDK LIVDDDLREM GKNAAWSVSS CKPGNGVNTL RDDNLETYWQ SDGLQPHLIN IQFQKKVRLQ LVALYVDFKL DESYTPSKIS
101: VRAGDGFHNL KEVKSVELVK PSGWVSISLS GTDPRETFVN TFMLQIAMLS NHLNGRDTHI RQIKVYGPRP NPIPRQPFQF TSTEFITYST LR

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.