Factsheet for VIT_04s0023g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_01s0026g02730.t01
VIT_02s0012g02000.t01
VIT_02s0087g00770.t01
VIT_05s0020g01730.t01
VIT_05s0124g00450.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_11s0016g03260.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_13s0019g01840.t01
VIT_15s0045g00310.t01
VIT_16s0039g01140.t01
VIT_16s0050g00030.t01
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT2G18290.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT2G18290.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT2G18290.1	VIT_05s0124g00450.t01	AT1G32310.1	20706207
AT2G18290.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT2G18290.1	VIT_01s0026g02730.t01	AT2G04660.1	20706207
AT2G18290.1	VIT_11s0016g03260.t01	AT2G20000.1	17944809
AT2G18290.1	VIT_11s0016g03260.t01	AT2G20000.1	20706207
AT2G18290.1	VIT_05s0020g01730.t01	AT2G39090.1	20706207
AT2G18290.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT2G18290.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT2G18290.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT2G18290.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT2G18290.1	VIT_16s0039g01140.t01	AT3G56150.1	20706207
AT2G18290.1	VIT_08s0007g07790.t01	AT3G57860.1	20706207
AT2G18290.1	VIT_02s0087g00770.t01	AT4G19210.1	20706207
AT2G18290.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT2G18290.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT2G18290.1	VIT_16s0050g00030.t01	AT4G25550.1	20706207
AT2G18290.1	VIT_13s0019g01840.t01	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08242	Soybean	cytosol	86.46	86.46
Solyc02g062680.2.1	Tomato	cytosol	85.42	85.86
PGSC0003DMT400040024	Potato	cytosol	85.42	85.86
KRH69898	Soybean	cytosol	85.42	85.42
AT2G18290.1	Thale cress	nucleus	84.38	84.38
Bra024475.1-P	Field mustard	cytosol	83.33	83.33
CDY20922	Canola	cytosol	83.33	83.33
CDY29224	Canola	cytosol	83.33	83.33
GSMUA_Achr1P03050_001	Banana	cytosol	81.77	80.51
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	80.21	76.62
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	79.69	76.12
Os05t0579800-01	Rice	cytosol	78.12	74.63
CDY25160	Canola	nucleus	54.69	72.92
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	75.0	72.73
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	77.6	65.35
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	29.17	52.34
KRG99106	Soybean	nucleus	30.73	48.36
TraesCS5A01G358300.1	Wheat	nucleus	28.65	36.42
TraesCS6A01G073800.1	Wheat	nucleus	28.65	36.42
TraesCS7A01G155100.1	Wheat	nucleus	28.65	36.42
TraesCS1D01G323600.1	Wheat	nucleus	28.12	35.76
TraesCS3B01G195200.1	Wheat	nucleus	26.56	33.77
KRH49548	Soybean	mitochondrion, plastid	28.65	30.9

Protein Annotations

EntrezGene:100256398	wikigene:100256398	MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom
ProteinID:CBI17502	ProteinID:CBI17502.3	UniProt:D7SPC3	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005680
GO:GO:0006139	GO:GO:0006259	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604
GO:GO:0016740	GO:GO:0019538	GO:GO:0031145	GO:GO:0032875	GO:GO:0032876	GO:GO:0051301
GO:GO:0061630	GO:GO:0070979	GO:GO:1904668	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979
EntrezGene:LOC100256398	wikigene:LOC100256398	PFAM:PF03256	PIRSF:PIRSF028841	PFscan:PS51284	PANTHER:PTHR12936
SMART:SM01337	SUPFAM:SSF49785	TIGR:TC62412	UniParc:UPI00015CADCC	ArrayExpress:VIT_04s0023g01940	EnsemblPlantsGene:VIT_04s0023g01940
EnsemblPlants:VIT_04s0023g01940.t01	unigene:Vvi.12200	RefSeq:XP_002266072	RefSeq:XP_002266072.1	SEG:seg	:

Description

Anaphase-promoting complex subunit 10 [Source:UniProtKB/TrEMBL;Acc:D7SPC3]

Coordinates

chr4:+:18515975..18517978

Molecular Weight (calculated)

21695.9 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.376

Length

192 amino acids

Sequence
(BLAST)

001: MATESSEGEE EGKMIGGNQH LVVDEDLREM AKKAAWSVSS CKAGNGVLLL RDDNLDTYWQ SDGAQPHLVN IQFLKKVKLQ LVVIYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKTVELVK PTGWVYISLS GNDPRETFVN TFMLQIAILS NHLNGRDTHV RQIKVYGPPP NPIPRQPFQF TSREFITYSS VR

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.