Factsheet for Os05t0579800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0972900-01
Os01t0973000-01
Os02t0123100-01
Os02t0123300-00
Os02t0282900-01
Os02t0656300-01
Os02t0785900-00
Os03t0236966-00
Os04t0484800-01
Os05t0149900-01
Os06t0622500-00
Os06t0679100-00
Os07t0124500-01
Os10t0575950-01
Os11t0546000-01
Os12t0489300-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	Os12t0626300-01	AT1G06590.1	20706207
AT2G18290.1	Os10t0575950-01	AT1G32310.1	20706207
AT2G18290.1	Os03t0236966-00	AT1G78770.1	20706207
AT2G18290.1	Os04t0484800-01	AT2G04660.1	20706207
AT2G18290.1	Os06t0622500-00	AT2G20000.1	17944809
AT2G18290.1	Os06t0622500-00	AT2G20000.1	20706207
AT2G18290.1	Os05t0149900-01	AT2G39090.1	20706207
AT2G18290.1	Os12t0489300-01	AT3G04620.1	20706207
AT2G18290.1	Os06t0622500-00	AT3G16320.1	17944809
AT2G18290.1	Os06t0622500-00	AT3G16320.1	20706207
AT2G18290.1	Os02t0656300-01	AT3G48150.1	20706207
AT2G18290.1	Os06t0679100-00	AT3G48150.1	20706207
AT2G18290.1	Os02t0123100-01	AT3G48750.1	20706207
AT2G18290.1	Os02t0123300-00	AT3G56150.1	20706207
AT2G18290.1	Os07t0124500-01	AT3G56150.1	20706207
AT2G18290.1	Os02t0282900-01	AT4G19210.1	20706207
AT2G18290.1	Os11t0546000-01	AT4G19210.1	20706207
AT2G18290.1	Os02t0785900-00	AT4G21530.1	20706207
AT2G18290.1	Os01t0972900-01	AT5G13840.1	20706207
AT2G18290.1	Os01t0973000-01	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	90.55	90.55
TraesCS1D01G427200.2	Wheat	cytosol	87.56	90.26
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	89.55	89.55
TraesCS1A01G419400.1	Wheat	cytosol	86.07	88.72
TraesCS1B01G449500.1	Wheat	cytoskeleton, cytosol, nucleus	89.05	88.61
GSMUA_Achr1P03050_001	Banana	cytosol	83.58	86.15
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	84.08	85.35
TraesCS6D01G354500.1	Wheat	cytosol	84.58	83.33
TraesCS6B01G407600.1	Wheat	cytosol	82.59	81.37
PGSC0003DMT400040024	Potato	cytosol	75.62	79.58
Solyc02g062680.2.1	Tomato	cytosol	75.12	79.06
VIT_04s0023g01940.t01	Wine grape	cytosol	74.63	78.12
CDY20922	Canola	cytosol	74.13	77.6
CDY29224	Canola	cytosol	74.13	77.6
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	87.56	77.19
Bra024475.1-P	Field mustard	cytosol	73.63	77.08
KRH69898	Soybean	cytosol	73.63	77.08
KRH08242	Soybean	cytosol	73.63	77.08
AT2G18290.1	Thale cress	nucleus	73.63	77.08
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	38.81	72.9
CDY25160	Canola	nucleus	51.24	71.53
KRG99106	Soybean	nucleus	28.36	46.72
KRH49548	Soybean	mitochondrion, plastid	25.37	28.65

Protein Annotations

MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	EntrezGene:4339716	ProteinID:AAU10698.1	EMBL:AK064624	InterPro:APC10/Doc1
InterPro:APC_su10/DOC_dom	ProteinID:BAS95511.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005680	GO:GO:0006139	GO:GO:0006259
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604	GO:GO:0016740	GO:GO:0019538
GO:GO:0031145	GO:GO:0032875	GO:GO:0032876	GO:GO:0051301	GO:GO:0061630	GO:GO:0070979
GO:GO:1904668	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979	EnsemblPlantsGene:Os05g0579800	EnsemblPlants:Os05t0579800-01
PFAM:PF03256	PIRSF:PIRSF028841	PFscan:PS51284	PANTHER:PTHR12936	UniProt:Q688U0	SMART:SM01337
SUPFAM:SSF49785	UniParc:UPI000042ABB8	RefSeq:XP_015638199.1	SEG:seg	:	:

Description

anaphase-promoting complex subunit 10, ANAPHASE PROMOTING COMPLEX 10Similar to Anaphase promoting complex subunit 10 (APC10) (Cyclosome subunit 10). (Os05t0579800-01)

Coordinates

chr5:+:28854843..28857818

Molecular Weight (calculated)

22317.4 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.420

Length

201 amino acids

Sequence
(BLAST)

001: MESDGEEEAA ATPGAGGAPA AGRLKGCPEL MVDDDMREMA KTAAWSVSSC KPGNGVASLR DDNLDTYWQS DGAQPHLVNI QFQKKVQLQL VVVYVDFKLD
101: ESYTPSKISV RAGDGFHNLK EIKTVELSKP VGWVHISLSG ADPRETFIHT FMLQISVLSN HLNGRDTHIR QIKIYGPRPN HVPHQPFHFT SREFVTYSTV
201: R

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.