Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20922 | Canola | cytosol | 100.0 | 100.0 |
| Bra024475.1-P | Field mustard | cytosol | 99.48 | 99.48 |
| AT2G18290.1 | Thale cress | nucleus | 91.67 | 91.67 |
| KRH08242 | Soybean | cytosol | 83.85 | 83.85 |
| CDY25160 | Canola | nucleus | 62.5 | 83.33 |
| VIT_04s0023g01940.t01 | Wine grape | cytosol | 83.33 | 83.33 |
| PGSC0003DMT400040024 | Potato | cytosol | 82.81 | 83.25 |
| KRH69898 | Soybean | cytosol | 82.81 | 82.81 |
| Solyc02g062680.2.1 | Tomato | cytosol | 82.29 | 82.72 |
| GSMUA_Achr1P03050_001 | Banana | cytosol | 79.17 | 77.95 |
| EES19889 | Sorghum | cytoskeleton, cytosol, nucleus | 78.12 | 74.63 |
| Os05t0579800-01 | Rice | cytosol | 77.6 | 74.13 |
| Zm00001d009440_P001 | Maize | cytoskeleton, cytosol, nucleus | 77.08 | 73.63 |
| Zm00001d038881_P001 | Maize | cytoskeleton, cytosol, nucleus | 73.96 | 71.72 |
| HORVU1Hr1G091550.1 | Barley | cytosol, nucleus | 76.04 | 64.04 |
| HORVU5Hr1G110350.1 | Barley | cytosol, nucleus, plastid | 27.6 | 49.53 |
| KRG99106 | Soybean | nucleus | 29.17 | 45.9 |
| TraesCS5A01G358300.1 | Wheat | nucleus | 27.6 | 35.1 |
| TraesCS6A01G073800.1 | Wheat | nucleus | 27.6 | 35.1 |
| TraesCS7A01G155100.1 | Wheat | nucleus | 27.6 | 35.1 |
| TraesCS1D01G323600.1 | Wheat | nucleus | 27.08 | 34.44 |
| TraesCS3B01G195200.1 | Wheat | nucleus | 26.04 | 33.11 |
| KRH49548 | Soybean | mitochondrion, plastid | 25.52 | 27.53 |
Protein Annotations
| MapMan:13.3.4.1.1.3.2 | Gene3D:2.60.120.260 | GO:A0A078G7D5 | UniProt:A0A078G7D5 | InterPro:APC10/Doc1 | InterPro:APC_su10/DOC_dom |
| ProteinID:CDY20922.1 | EnsemblPlants:CDY29224 | ProteinID:CDY29224 | ProteinID:CDY29224.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031145 | GO:GO:0051301 | EnsemblPlantsGene:GSBRNA2T00042149001 |
| InterPro:Galactose-bd-like_sf | InterPro:IPR004939 | InterPro:IPR008979 | PFAM:PF03256 | PIRSF:PIRSF028841 | PFscan:PS51284 |
| PANTHER:PTHR12936 | SMART:SM01337 | SUPFAM:SSF49785 | UniParc:UPI0004EBDED5 | : | : |
Description
BnaA06g25330DAnaphase-promoting complex subunit 10 [Source:UniProtKB/TrEMBL;Acc:A0A078G7D5]
Coordinates
chrLK032233:-:367398..369101
Molecular Weight (calculated)
21689.7 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.530
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MATESSESEE EGKIRGGNDK LIVDDDLREM GKNAAWSVSS CKPGNGVNTL RDDNLETYWQ SDGLQPHLIN IQFQKKVRLQ LVALYVDFKL DESYTPSKIS
101: VRAGDGFHNL KEVKSVELVK PSGWVSISLS GADPRETFVN TFMLQIAMLS NHLNGRDTHI RQIKVYGPRP NPIPRQPFQF TSTEFITYST LR
101: VRAGDGFHNL KEVKSVELVK PSGWVSISLS GADPRETFVN TFMLQIAMLS NHLNGRDTHI RQIKVYGPRP NPIPRQPFQF TSTEFITYST LR
001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
Arabidopsis Description
APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.