Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007362.1-P | Field mustard | cytosol | 90.36 | 91.09 |
| CDX71989 | Canola | plastid | 86.75 | 71.05 |
| AT3G57860.1 | Thale cress | cytosol | 67.07 | 68.72 |
| CDY22476 | Canola | cytosol | 21.29 | 67.95 |
| CDY53501 | Canola | nucleus | 55.02 | 61.16 |
| CDX79885 | Canola | nucleus | 52.61 | 58.74 |
| CDX98240 | Canola | mitochondrion | 32.93 | 54.3 |
| CDY08664 | Canola | cytosol | 25.7 | 47.41 |
| KRH67023 | Soybean | nucleus | 37.35 | 43.26 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 45.38 | 42.48 |
| PGSC0003DMT400060963 | Potato | nucleus | 40.16 | 39.22 |
| KRG95339 | Soybean | mitochondrion, plastid | 34.54 | 39.09 |
| Solyc10g080400.1.1 | Tomato | nucleus | 35.74 | 38.53 |
Protein Annotations
| EnsemblPlants:CDY06071 | EnsemblPlantsGene:GSBRNA2T00121934001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0051783 | GO:GO:1904667 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | ProteinID:CDY06071 |
| ProteinID:CDY06071.1 | SEG:seg | UniParc:UPI0004EDF6E1 | MapMan:13.3.4.1.5 | : | : |
Description
BnaA09g37090D
Coordinates
chrLK031967:-:582524..585217
Molecular Weight (calculated)
27567.3 Da
IEP (calculated)
10.492
GRAVY (calculated)
-0.584
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEARDRLEK PVDYAAIFAN RRSHGVLLDE PEAGLGVLEH PVRRLPSGSR VYPQPGGNYS SWRPGHGNGS GQSPFRFSQG RENVTMASAR RGRGGASGSL
101: LPSWYPRTPL RDITHIMRAI ERKRRAGMGV ESALGGETPS HQQVRFLETP VALAEDEHNC VMVTPAPAVG LKRSCPPSTA KVHKMLLDIT KEISEKDEEA
201: GFITPEKKLL NSIDVVEKIV MAEIQKLKST PLAKRQEREK RVKTLMSMR
101: LPSWYPRTPL RDITHIMRAI ERKRRAGMGV ESALGGETPS HQQVRFLETP VALAEDEHNC VMVTPAPAVG LKRSCPPSTA KVHKMLLDIT KEISEKDEEA
201: GFITPEKKLL NSIDVVEKIV MAEIQKLKST PLAKRQEREK RVKTLMSMR
001: MPEARDRTER PVDYSTIFAN RRRHGILLDE PDSRLSLIES PVNPDIGSIG GTGGLVRGNF TTWRPGNGRG GHTPFRLPQG RENMPIVTAR RGRGGGLLPS
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
Arabidopsis Description
GIG1Protein GIGAS CELL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.