CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74867
CDX79070
CDX82833
CDX87437
CDX88475
CDX97740
CDY06219
CDY06464
CDY06653
CDY09966
CDY10211
CDY10563
CDY10634
CDY30158
CDY34315
CDY35917
CDY36901
CDY37406
CDY37408
CDY40468
CDY44628
CDY44976
CDY53538
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57860.1	CDY06219	AT1G06590.1	20706207
AT3G57860.1	CDY06653	AT1G06590.1	20706207
AT3G57860.1	CDY09966	AT1G06590.1	20706207
AT3G57860.1	CDY10211	AT1G06590.1	20706207
AT3G57860.1	CDX87437	AT1G78770.1	20706207
AT3G57860.1	CDX88475	AT1G78770.1	20706207
AT3G57860.1	CDY10563	AT1G78770.1	20706207
AT3G57860.1	CDY35917	AT2G20000.1	20706207
AT3G57860.1	CDY40468	AT2G20000.1	20706207
AT3G57860.1	CDX74867	AT2G39090.1	20706207
AT3G57860.1	CDY06464	AT2G39090.1	20706207
AT3G57860.1	CDY44628	AT2G39090.1	20706207
AT3G57860.1	CDY53538	AT2G39090.1	20706207
AT3G57860.1	CDX97740	AT3G16320.1	20706207
AT3G57860.1	CDY30158	AT3G16320.1	20706207
AT3G57860.1	CDY10634	AT3G22310.1	20706207
AT3G57860.1	CDY37406	AT3G22310.1	20706207
AT3G57860.1	CDY37408	AT3G22310.1	20706207
AT3G57860.1	CDY36901	AT3G48150.1	20706207
AT3G57860.1	CDY44976	AT3G48150.1	20706207
AT3G57860.1	CDY58069	AT3G48150.1	20706207
AT3G57860.1	CDY58070	AT3G48150.1	20706207
AT3G57860.1	CDY70805	AT3G48150.1	20706207
AT3G57860.1	CDX79070	AT4G21530.1	20706207
AT3G57860.1	CDX82833	AT4G21530.1	20706207
AT3G57860.1	CDY34315	AT4G24820.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08664	Canola	cytosol	54.3	60.74
CDY22476	Canola	cytosol	31.13	60.26
CDY06071	Canola	cytosol	54.3	32.93
AT3G57860.1	Thale cress	cytosol	48.34	30.04
CDY53501	Canola	nucleus	43.05	29.02
CDX79885	Canola	nucleus	42.38	28.7
CDX71989	Canola	plastid	54.97	27.3
Solyc10g080400.1.1	Tomato	nucleus	33.11	21.64
VIT_08s0007g07790.t01	Wine grape	nucleus	37.75	21.43
PGSC0003DMT400060963	Potato	nucleus	35.1	20.78
KRH67023	Soybean	nucleus	29.14	20.47
KRG95339	Soybean	mitochondrion, plastid	29.8	20.45

Protein Annotations

MapMan:13.3.4.1.5	EnsemblPlants:CDX98240	ProteinID:CDX98240	ProteinID:CDX98240.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0051783	GO:GO:1904667	EnsemblPlantsGene:GSBRNA2T00105742001	InterPro:POLYCHOME/GIG1
PANTHER:PTHR35119	PANTHER:PTHR35119:SF1	UniParc:UPI0004EDDF4B	SEG:seg	:	:

Description

BnaC07g08580D

Coordinates

chrLK031903:+:1256037..1257728

Molecular Weight (calculated)

16659.2 Da

IEP (calculated)

10.977

GRAVY (calculated)

-0.419

Length

151 amino acids

Sequence
(BLAST)

001: MSRPRPRRGG KAGASRSLLP SWWPRGNLSD ITHIMRAVET STTGVLQTPV ASALAEHSSV MVTPAPAVGL KRSGPASTAS LRKRVRDYIN KEIAAGEEEG
101: AGFITPQKML LNSIEMVEKL VTSELHRMQS TREREERETV VKHLLLSYNK I

Best Arabidopsis Sequence Match ( AT3G57860.1 )
(BLAST)

001: MPEARDRTER PVDYSTIFAN RRRHGILLDE PDSRLSLIES PVNPDIGSIG GTGGLVRGNF TTWRPGNGRG GHTPFRLPQG RENMPIVTAR RGRGGGLLPS
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR

Arabidopsis Description

GIG1Protein GIGAS CELL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.