Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025616.1-P | Field mustard | cytosol | 99.28 | 99.88 |
| CDY30292 | Canola | cytosol | 87.71 | 86.78 |
| AT2G04660.1 | Thale cress | cytosol | 83.53 | 80.92 |
| CDY04835 | Canola | cytosol | 81.86 | 80.42 |
| HORVU2Hr1G083840.8 | Barley | cytosol | 42.96 | 68.83 |
| KRH32716 | Soybean | golgi | 23.15 | 67.83 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 69.33 | 65.8 |
| HORVU0Hr1G004870.2 | Barley | cytosol | 17.78 | 63.95 |
| KRG97883 | Soybean | cytosol | 65.87 | 62.37 |
| KRH30995 | Soybean | cytosol | 65.63 | 62.22 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 64.92 | 62.17 |
| PGSC0003DMT400047444 | Potato | cytosol | 64.56 | 61.2 |
| Solyc05g007750.2.1 | Tomato | cytosol | 64.32 | 61.04 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 24.82 | 60.64 |
| KXG20781 | Sorghum | cytosol | 61.1 | 59.6 |
| TraesCS2A01G321000.1 | Wheat | cytosol | 61.1 | 59.53 |
| Os04t0484800-01 | Rice | cytosol | 61.34 | 59.49 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 60.98 | 59.42 |
| TraesCS2D01G341700.1 | Wheat | cytosol | 60.86 | 59.3 |
| Zm00001d014685_P009 | Maize | cytosol | 60.26 | 58.72 |
| HORVU0Hr1G004910.1 | Barley | cytosol | 5.49 | 37.1 |
| KRH74904 | Soybean | cytosol, extracellular, peroxisome | 4.06 | 31.78 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | MapMan:13.3.4.1.1.3.1 | GO:A0A078GWI1 | UniProt:A0A078GWI1 | InterPro:APC_su2_C |
| EnsemblPlants:CDY30835 | ProteinID:CDY30835 | ProteinID:CDY30835.1 | InterPro:Cullin_N | InterPro:Cullin_homology | InterPro:Cullin_homology_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031625 | EnsemblPlantsGene:GSBRNA2T00046302001 | InterPro:IPR016158 |
| InterPro:IPR036388 | PFAM:PF00888 | PFAM:PF08672 | PFscan:PS50069 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF5 |
| SMART:SM00182 | SMART:SM01013 | SUPFAM:SSF46785 | SUPFAM:SSF75632 | UniPathway:UPA00143 | UniParc:UPI0004EF171C |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC04g26900DBnaC04g26900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWI1]
Coordinates
chrLK032262:-:8569..12531
Molecular Weight (calculated)
95116.0 Da
IEP (calculated)
4.520
GRAVY (calculated)
-0.281
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLFEYNLET LSDDAIREIT ESYDGFFTTV ESLIAGAGDF AVEKEFVSHV STLCNYGLDS LVCDHFLRSL EQAFDKSGAS SFWHHFDDYS DKNHTMLFGQ
101: DCGEEVHQLL SKALEEISTE KQYNEKCISM VVHALQSFKE KRLSSDAERA QIFSRFQSML SSTLMTTLPQ HFPEILHCYF KEKLEELSTI MDEDDAQQLE
201: SDGMDLDVDE GYSRHDEFVK NIGKVVCDLR SLGFTSMAEN AYASAIFLLL KSKVHDLAGD DYRTSVLGPI KEWIQTVPLQ FLSALLCYIG DSISYDTTAC
301: GLTSPLDCCP SPSFSKVVTP SQGIGRWKLL LEYFAYETLQ DLRIAKLFEI IVDYPESSPA IEDLKQCLEY TRQHSKLVES FISSLKYRLL TAGASTNDIF
401: HQYVLTIKAF RAIDPSGVFL EPVAEPIRDY LRGRKDTIKC IVTMLTDGSG GNRNGSGNPG DSLLEELMRD EENQENVGFD DDFHTDDKQA WINASRWEPD
501: PLEAGPSKGS LSERKVDILG MLVDIIGSSE QLVNEYRVML AEKLLNKIDY DIETEIRTVE LLKIHFGEAS MQRCEIMLND LIDSKRVNTN IKKTSQTGAE
601: VVESELSVDI LTSKILSTNF WPPIQDEPLE LPAPIDKLLS DYANRYHEIK TPRKLLWKKN LGTVKLELQF EDRAMQFTVS PTHAAIIMQF QEKKIWTSID
701: LAAAIGIPID LLNRRVNFWI SQGVLRESNA NVFTLVESMT NSGKNESEEI LASDEESERS IAYVEDQLRK ETTIYKNFIM AMLTNGSMAV DGIHNRLKMF
801: YVADPAYDKS LQQLQSFLSR LVAEEKLELR DGMYLLKK
101: DCGEEVHQLL SKALEEISTE KQYNEKCISM VVHALQSFKE KRLSSDAERA QIFSRFQSML SSTLMTTLPQ HFPEILHCYF KEKLEELSTI MDEDDAQQLE
201: SDGMDLDVDE GYSRHDEFVK NIGKVVCDLR SLGFTSMAEN AYASAIFLLL KSKVHDLAGD DYRTSVLGPI KEWIQTVPLQ FLSALLCYIG DSISYDTTAC
301: GLTSPLDCCP SPSFSKVVTP SQGIGRWKLL LEYFAYETLQ DLRIAKLFEI IVDYPESSPA IEDLKQCLEY TRQHSKLVES FISSLKYRLL TAGASTNDIF
401: HQYVLTIKAF RAIDPSGVFL EPVAEPIRDY LRGRKDTIKC IVTMLTDGSG GNRNGSGNPG DSLLEELMRD EENQENVGFD DDFHTDDKQA WINASRWEPD
501: PLEAGPSKGS LSERKVDILG MLVDIIGSSE QLVNEYRVML AEKLLNKIDY DIETEIRTVE LLKIHFGEAS MQRCEIMLND LIDSKRVNTN IKKTSQTGAE
601: VVESELSVDI LTSKILSTNF WPPIQDEPLE LPAPIDKLLS DYANRYHEIK TPRKLLWKKN LGTVKLELQF EDRAMQFTVS PTHAAIIMQF QEKKIWTSID
701: LAAAIGIPID LLNRRVNFWI SQGVLRESNA NVFTLVESMT NSGKNESEEI LASDEESERS IAYVEDQLRK ETTIYKNFIM AMLTNGSMAV DGIHNRLKMF
801: YVADPAYDKS LQQLQSFLSR LVAEEKLELR DGMYLLKK
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Arabidopsis Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.