CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68960	Canola	nucleus	96.78	87.41
CDY13491	Canola	cytosol	83.91	85.05
CDY71694	Canola	nucleus	29.76	64.16
CDY59110	Canola	nucleus	71.31	63.48
CDY59109	Canola	nucleus	71.31	63.48
CDY52543	Canola	nucleus	72.12	62.85
CDY28290	Canola	cytosol, mitochondrion, nucleus	23.86	60.96
CDY46124	Canola	cytosol	94.37	56.77
CDY26774	Canola	mitochondrion	16.35	55.45
CDY59111	Canola	nucleus	31.64	54.63
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	24.13	46.63
CDY71065	Canola	cytosol	12.6	45.63
CDY44519	Canola	cytosol, nucleus	61.13	43.93
CDX98239	Canola	nucleus	15.55	43.28
CDX78541	Canola	plastid	41.02	32.69
CDX70523	Canola	plastid	41.02	32.69
CDY10820	Canola	nucleus, plastid	40.21	31.91
CDY41283	Canola	nucleus, plastid	40.21	31.85
CDX94473	Canola	nucleus	40.21	31.78
CDX86737	Canola	nucleus	40.21	31.58
CDY51550	Canola	nucleus	37.27	30.62
CDX90811	Canola	nucleus	37.0	30.46
CDY04804	Canola	mitochondrion, plastid	12.6	29.38
CDX94136	Canola	nucleus, plastid	28.95	28.27
CDY71640	Canola	nucleus, plastid	15.82	24.58
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX75343	ProteinID:CDX75343	ProteinID:CDX75343.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00121221001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE1E2C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA01g03590D

Coordinates

chrLK031804:-:733330..735872

Molecular Weight (calculated)

40921.0 Da

IEP (calculated)

8.000

GRAVY (calculated)

-0.508

Length

373 amino acids

Sequence
(BLAST)

001: MDAGMNTSTH LKAQARCPLQ EHFLPRKSSK ENLDRFIPNR SAMDFDYAHY ALTEGRNGKD QVAAAVSSPS REAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPTDHSAS LHHQPKSVKA RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALGH TVYLWDASSG STSELVTIDE EKGPVTSINW APDGRHVALG
201: LNNSEVQLWD SGSNRQLRTL KGCHQSRVGS LAGHTQEVCG LKWSGSGQQL ASGGNDNVVH IWDPNLLATG GGGGDRTIKF WNTHTGACLN SVDTGSQNQL
301: TLWKYPSMVK MAELTGHTSR VLYMAQSPDG CTVASAAGDE TLRFWNVFGV PETAKKAAPK ATHEPFSHVN RIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.