CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59111	Canola	nucleus	67.63	54.17
GSMUA_Achr1P27670_001	Banana	cytosol	19.65	53.97
GSMUA_AchrUn_...	Banana	cytosol	22.54	44.83
CDY26774	Canola	mitochondrion	28.32	44.55
CDY71065	Canola	cytosol	21.39	35.92
GSMUA_Achr1P27660_001	Banana	mitochondrion	31.79	34.16
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	37.57	33.68
CDY13491	Canola	cytosol	66.47	31.25
GSMUA_AchrUn_...	Banana	cytosol	41.62	30.13
CDX75343	Canola	nucleus	64.16	29.76
CDY59109	Canola	nucleus	70.52	29.12
CDY59110	Canola	nucleus	70.52	29.12
CDY52543	Canola	nucleus	70.52	28.5
KRG94456	Soybean	cytosol	36.99	27.23
CDX68960	Canola	nucleus	64.74	27.12
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	61.85	25.0
GSMUA_Achr1P25940_001	Banana	cytosol	42.77	24.92
AT5G27570.1	Thale cress	nucleus	63.01	24.22
KRH44738	Soybean	nucleus	61.27	23.98
AT5G27080.1	Thale cress	nucleus	60.12	23.53
KRH68047	Soybean	nucleus	61.85	23.41
AT5G26900.1	Thale cress	nucleus	59.54	23.2
GSMUA_AchrUn_...	Banana	cytosol	40.46	22.95
CDY04804	Canola	mitochondrion, plastid	20.23	21.88
PGSC0003DMT400047585	Potato	nucleus	52.6	20.31
Solyc08g005420.2.1	Tomato	nucleus	52.6	20.31
CDY44519	Canola	cytosol, nucleus	58.96	19.65
GSMUA_AchrUn_...	Banana	cytosol	38.73	18.41
GSMUA_Achr3P21370_001	Banana	cytosol	41.04	17.88
GSMUA_AchrUn_...	Banana	nucleus	42.2	17.76
GSMUA_Achr1P28050_001	Banana	cytosol	41.62	17.69
CDY46124	Canola	cytosol	61.27	17.1
CDX90811	Canola	nucleus	40.46	15.45
CDY51550	Canola	nucleus	40.46	15.42
CDX70523	Canola	plastid	41.04	15.17
CDX78541	Canola	plastid	41.04	15.17
CDX94473	Canola	nucleus	41.04	15.04
CDX86737	Canola	nucleus	41.04	14.95
CDY10820	Canola	nucleus, plastid	40.46	14.89
CDY41283	Canola	nucleus, plastid	40.46	14.86
CDX94136	Canola	nucleus, plastid	20.23	9.16
CDX98239	Canola	nucleus	5.78	7.46
GSMUA_AchrUn_...	Banana	cytosol	9.25	5.59
KRH07005	Soybean	nucleus	3.47	4.84
CDY28290	Canola	cytosol, mitochondrion, nucleus	1.16	1.37
CDY71640	Canola	nucleus, plastid	1.16	0.83
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JYD2	EnsemblPlants:CDY71694	ProteinID:CDY71694	ProteinID:CDY71694.1
InterPro:Cdc20/Fizzy	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0051488	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00018104001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDD70E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaCnng73980DBnaCnng73980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYD2]

Coordinates

chrLK046962:+:250..926

Molecular Weight (calculated)

18843.1 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.556

Length

173 amino acids

Sequence
(BLAST)

001: MEQSHPQNLR NGRKNCQDQV ACFGNLQMSH WRGLWAKWSG SGKQLASGGN DNVVHVWDRS AASSSSTTTH LLATGGGGGD GTIKFWNTHT GACLNSNHLA
101: LWKNPSLVKM AELTGHTSRV LYMAQSPDHG CTVASAAGDE TLRFWDVFGM PETAKKPDQK AAHEPFRHVS CIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.