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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX71989
CDX73850
CDX74120
CDX74867
CDX79070
CDX79885
CDX82833
CDX87437
CDX88475
CDX89193
CDX98240
CDY01062
CDY04835
CDY06071
CDY06219
CDY06464
CDY06653
CDY08491
CDY08664
CDY09966
CDY10211
CDY10563
CDY18835
CDY18994
CDY22476
CDY30292
CDY30835
CDY35917
CDY36901
CDY40468
CDY44628
CDY44976
CDY49990
CDY53501
CDY53538
CDY53919
CDY58069
CDY58070
CDY67306
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33270.1 CDY06219 AT1G06590.1 20706207
AT4G33270.1 CDY06653 AT1G06590.1 20706207
AT4G33270.1 CDY09966 AT1G06590.1 20706207
AT4G33270.1 CDY10211 AT1G06590.1 20706207
AT4G33270.1 CDX87437 AT1G78770.1 20706207
AT4G33270.1 CDX88475 AT1G78770.1 20706207
AT4G33270.1 CDY10563 AT1G78770.1 20706207
AT4G33270.1 CDY04835 AT2G04660.1 20706207
AT4G33270.1 CDY30292 AT2G04660.1 20706207
AT4G33270.1 CDY30835 AT2G04660.1 20706207
AT4G33270.1 CDY35917 AT2G20000.1 17944809
AT4G33270.1 CDY40468 AT2G20000.1 17944809
AT4G33270.1 CDY35917 AT2G20000.1 20706207
AT4G33270.1 CDY40468 AT2G20000.1 20706207
AT4G33270.1 CDX74867 AT2G39090.1 20706207
AT4G33270.1 CDY06464 AT2G39090.1 20706207
AT4G33270.1 CDY44628 AT2G39090.1 20706207
AT4G33270.1 CDY53538 AT2G39090.1 20706207
AT4G33270.1 CDX79885 AT2G42260.1 20706207
AT4G33270.1 CDY53501 AT2G42260.1 20706207
AT4G33270.1 CDX73850 AT3G11830.1 20706207
AT4G33270.1 CDY01062 AT3G11830.1 20706207
AT4G33270.1 CDY08491 AT3G11830.1 20706207
AT4G33270.1 CDY53919 AT3G11830.1 20706207
AT4G33270.1 CDY67306 AT3G11830.1 20706207
AT4G33270.1 CDY36901 AT3G48150.1 20706207
AT4G33270.1 CDY44976 AT3G48150.1 20706207
AT4G33270.1 CDY58069 AT3G48150.1 20706207
AT4G33270.1 CDY58070 AT3G48150.1 20706207
AT4G33270.1 CDY70805 AT3G48150.1 20706207
AT4G33270.1 CDX71989 AT3G57860.1 20706207
AT4G33270.1 CDX98240 AT3G57860.1 20706207
AT4G33270.1 CDY06071 AT3G57860.1 20706207
AT4G33270.1 CDY08664 AT3G57860.1 20706207
AT4G33270.1 CDY22476 AT3G57860.1 20706207
AT4G33270.1 CDX79070 AT4G21530.1 20706207
AT4G33270.1 CDX82833 AT4G21530.1 20706207
AT4G33270.1 CDX89193 AT4G28230.1 20706207
AT4G33270.1 CDY18994 AT4G28230.1 20706207
AT4G33270.1 CDX74120 AT5G26360.1 20706207
AT4G33270.1 CDY18835 AT5G26360.1 20706207
AT4G33270.1 CDY49990 AT5G26360.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75343 Canola nucleus 56.77 94.37
CDX75342 Canola cytosol 34.03 94.2
CDX68960 Canola nucleus 56.94 85.47
CDY13491 Canola cytosol 50.65 85.33
Bra037011.1-P Field mustard nucleus 56.13 83.05
AT4G33260.1 Thale cress nucleus 55.0 76.29
AT4G33270.1 Thale cress nucleus 56.13 76.15
CDY59109 Canola nucleus 41.61 61.58
CDY59110 Canola nucleus 41.61 61.58
CDY71694 Canola nucleus 17.1 61.27
CDY52543 Canola nucleus 42.26 61.22
CDY28290 Canola cytosol, mitochondrion, nucleus 14.03 59.59
KRH68047 Soybean nucleus 43.55 59.08
KRH44738 Soybean nucleus 41.13 57.69
GSMUA_Achr1P27670_001 Banana cytosol 5.65 55.56
Solyc08g005420.2.1 Tomato nucleus 38.55 53.35
PGSC0003DMT400047585 Potato nucleus 38.55 53.35
KRH07005 Soybean nucleus 10.48 52.42
CDY59111 Canola nucleus 18.23 52.31
CDY26774 Canola mitochondrion 9.03 50.91
GSMUA_AchrUn_... Banana cytosol 6.94 49.43
CDY44519 Canola cytosol, nucleus 37.74 45.09
CDY71065 Canola cytosol 7.42 44.66
KRG94456 Soybean cytosol 16.77 44.26
CDY28289 Canola cytosol, extracellular, mitochondrion, plastid 13.71 44.04
CDX98239 Canola nucleus 9.35 43.28
GSMUA_Achr1P27660_001 Banana mitochondrion 10.48 40.37
GSMUA_Achr3P21370_001 Banana cytosol 24.68 38.54
GSMUA_AchrUn_... Banana nucleus 25.48 38.44
GSMUA_AchrUn_... Banana cytosol 22.26 37.91
GSMUA_Achr1P28050_001 Banana cytosol 24.84 37.84
GSMUA_Achr1P25940_001 Banana cytosol 17.42 36.36
GSMUA_AchrUn_... Banana cytosol 13.71 35.56
GSMUA_AchrUn_... Banana cytosol 15.48 33.57
GSMUA_AchrUn_... Banana cytosol 16.29 33.11
CDX70523 Canola plastid 24.68 32.69
CDX78541 Canola plastid 24.68 32.69
CDX94473 Canola nucleus 24.03 31.57
CDX86737 Canola nucleus 24.03 31.37
CDY10820 Canola nucleus, plastid 23.71 31.28
CDY41283 Canola nucleus, plastid 23.71 31.21
CDX90811 Canola nucleus 21.94 30.02
CDY51550 Canola nucleus 21.94 29.96
CDY04804 Canola mitochondrion, plastid 7.42 28.75
CDX94136 Canola nucleus, plastid 16.94 27.49
CDY71640 Canola nucleus, plastid 9.35 24.17
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.25.40.250MapMan:17.4.1.3.11Gene3D:2.130.10.10GO:A0A078I9W5UniProt:A0A078I9W5
InterPro:ARM-type_foldInterPro:Apc4_WD40_domEnsemblPlants:CDY46124ProteinID:CDY46124ProteinID:CDY46124.1InterPro:CSN8_PSD8_EIF3K
InterPro:Cdc20/FizzyGO:GO:0001731GO:GO:0001732GO:GO:0002183GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003743GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005852GO:GO:0006412GO:GO:0006413GO:GO:0006446
GO:GO:0006464GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0010997GO:GO:0016043GO:GO:0016282GO:GO:0019538GO:GO:0030234GO:GO:0033290
GO:GO:0043022GO:GO:0051488GO:GO:0097027GO:GO:1904668EnsemblPlantsGene:GSBRNA2T00083286001InterPro:IPR000717
InterPro:IPR001680InterPro:IPR015943InterPro:IPR016020InterPro:IPR017986InterPro:IPR036388HAMAP:MF_03010
InterPro:PCI_domPFAM:PF00400PFAM:PF10075PFAM:PF12894ScanProsite:PS00678PFscan:PS50082
PFscan:PS50250PFscan:PS50294PANTHER:PTHR19918PANTHER:PTHR19918:SF30SMART:SM00320SUPFAM:SSF46785
SUPFAM:SSF48371SUPFAM:SSF50978InterPro:Transl_init_fac_sub12_N_eukUniParc:UPI0004EDFF78InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfInterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sfInterPro:eIF3k
Description
BnaA03g52440DEukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/TrEMBL;Acc:A0A078I9W5]
Coordinates
chrLK032650:+:141484..145728
Molecular Weight (calculated)
69367.1 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.463
Length
620 amino acids
Sequence
(BLAST)
001: MDAGMNTSTH LKAQARCPLQ EHFLPRKNSK ENLDRFIPNR SAMDFDYAHY ALTEGNKGKD QVSSPSREAY RKQLAETMNL NHTRILAFRN KPLAPVELLP
101: TDHSASLHQQ PKSVKPRRYI PQTSERTLDA PDIVDDFYLN LLDWGSANVL AIALGHTVYL WDASTGSTSE LVTIDEEKGP VTSINWAPDG RHVAVGLNNS
201: EVQLWDSGSN RQLRTLKGCH QSRVGSLAGH TQEVCGLKWS GSGQQLASGG NDNVANLLAT GGGGGDRTIK FWNTHTGACL NSVDTGSQNQ LTLWKYPSMV
301: KMAELTGHTS RVLYMAQSPD GCTVASAAGD ETLRFWNVFG VPETAKKAAP KAVHEPFSHV NRIQRQKLLF TKETLDSYYH SNLNPKTPPR EHRRKEMESP
401: KEQSSYTVEQ LVAVNPFNPE ILPDLENYVN EQVTSQTYSL DANLCLLRLY QFEPERMNTH VVARILIKAL MAMPTPDFSL CLFLIPERVQ MDEQCKALIV
501: LSHYLETGRF QQFWDEAAKN RHFLESVPGF EQAIQAYASH LLSLSYQKVP RSVLAEAVNM DGASLDKFIE HQVANSGWIV EKEDGSIVLP QNEFNHPELK
601: KNAGENVPLE HIARIFPILG
Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.