CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71989
CDX73850
CDX74120
CDX74867
CDX79070
CDX79885
CDX82833
CDX87437
CDX88475
CDX89193
CDX98240
CDY01062
CDY04835
CDY06071
CDY06219
CDY06464
CDY06653
CDY08491
CDY08664
CDY09966
CDY10211
CDY10563
CDY18835
CDY18994
CDY22476
CDY30292
CDY30835
CDY35917
CDY36901
CDY40468
CDY44628
CDY44976
CDY49990
CDY53501
CDY53538
CDY53919
CDY58069
CDY58070
CDY67306
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	CDY06219	AT1G06590.1	20706207
AT4G33270.1	CDY06653	AT1G06590.1	20706207
AT4G33270.1	CDY09966	AT1G06590.1	20706207
AT4G33270.1	CDY10211	AT1G06590.1	20706207
AT4G33270.1	CDX87437	AT1G78770.1	20706207
AT4G33270.1	CDX88475	AT1G78770.1	20706207
AT4G33270.1	CDY10563	AT1G78770.1	20706207
AT4G33270.1	CDY04835	AT2G04660.1	20706207
AT4G33270.1	CDY30292	AT2G04660.1	20706207
AT4G33270.1	CDY30835	AT2G04660.1	20706207
AT4G33270.1	CDY35917	AT2G20000.1	17944809
AT4G33270.1	CDY40468	AT2G20000.1	17944809
AT4G33270.1	CDY35917	AT2G20000.1	20706207
AT4G33270.1	CDY40468	AT2G20000.1	20706207
AT4G33270.1	CDX74867	AT2G39090.1	20706207
AT4G33270.1	CDY06464	AT2G39090.1	20706207
AT4G33270.1	CDY44628	AT2G39090.1	20706207
AT4G33270.1	CDY53538	AT2G39090.1	20706207
AT4G33270.1	CDX79885	AT2G42260.1	20706207
AT4G33270.1	CDY53501	AT2G42260.1	20706207
AT4G33270.1	CDX73850	AT3G11830.1	20706207
AT4G33270.1	CDY01062	AT3G11830.1	20706207
AT4G33270.1	CDY08491	AT3G11830.1	20706207
AT4G33270.1	CDY53919	AT3G11830.1	20706207
AT4G33270.1	CDY67306	AT3G11830.1	20706207
AT4G33270.1	CDY36901	AT3G48150.1	20706207
AT4G33270.1	CDY44976	AT3G48150.1	20706207
AT4G33270.1	CDY58069	AT3G48150.1	20706207
AT4G33270.1	CDY58070	AT3G48150.1	20706207
AT4G33270.1	CDY70805	AT3G48150.1	20706207
AT4G33270.1	CDX71989	AT3G57860.1	20706207
AT4G33270.1	CDX98240	AT3G57860.1	20706207
AT4G33270.1	CDY06071	AT3G57860.1	20706207
AT4G33270.1	CDY08664	AT3G57860.1	20706207
AT4G33270.1	CDY22476	AT3G57860.1	20706207
AT4G33270.1	CDX79070	AT4G21530.1	20706207
AT4G33270.1	CDX82833	AT4G21530.1	20706207
AT4G33270.1	CDX89193	AT4G28230.1	20706207
AT4G33270.1	CDY18994	AT4G28230.1	20706207
AT4G33270.1	CDX74120	AT5G26360.1	20706207
AT4G33270.1	CDY18835	AT5G26360.1	20706207
AT4G33270.1	CDY49990	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75343	Canola	nucleus	87.41	96.78
CDY13491	Canola	cytosol	74.82	83.97
AT4G33270.1	Thale cress	nucleus	91.53	82.71
AT4G33260.1	Thale cress	nucleus	89.35	82.55
CDY59109	Canola	nucleus	70.22	69.21
CDY59110	Canola	nucleus	70.22	69.21
CDY52543	Canola	nucleus	71.43	68.93
CDY71694	Canola	nucleus	27.12	64.74
KRH68047	Soybean	nucleus	71.43	64.55
KRH44738	Soybean	nucleus	67.55	63.12
CDY59111	Canola	nucleus	32.45	62.04
CDY28290	Canola	cytosol, mitochondrion, nucleus	21.55	60.96
Solyc08g005420.2.1	Tomato	nucleus	64.41	59.38
PGSC0003DMT400047585	Potato	nucleus	63.68	58.71
CDY46124	Canola	cytosol	85.47	56.94
CDY26774	Canola	mitochondrion	15.01	56.36
Bra011430.1-P	Field mustard	cytosol	95.4	55.1
GSMUA_Achr1P27670_001	Banana	cytosol	8.23	53.97
KRG94456	Soybean	cytosol	30.51	53.62
KRH07005	Soybean	nucleus	15.5	51.61
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	23.49	50.26
GSMUA_AchrUn_...	Banana	cytosol	10.17	48.28
CDY44519	Canola	cytosol, nucleus	59.81	47.59
CDY71065	Canola	cytosol	11.38	45.63
CDX98239	Canola	nucleus	14.04	43.28
GSMUA_AchrUn_...	Banana	nucleus	42.37	42.58
GSMUA_AchrUn_...	Banana	cytosol	24.46	42.26
GSMUA_Achr3P21370_001	Banana	cytosol	40.44	42.07
GSMUA_Achr1P28050_001	Banana	cytosol	41.4	42.01
GSMUA_Achr1P25940_001	Banana	cytosol	30.02	41.75
GSMUA_AchrUn_...	Banana	cytosol	36.08	40.93
GSMUA_Achr1P27660_001	Banana	mitochondrion	15.5	39.75
GSMUA_AchrUn_...	Banana	cytosol	27.6	37.38
GSMUA_AchrUn_...	Banana	cytosol	25.18	36.36
CDX70523	Canola	plastid	39.95	35.26
CDX78541	Canola	plastid	39.95	35.26
CDX94473	Canola	nucleus	38.26	33.47
CDY10820	Canola	nucleus, plastid	38.01	33.4
CDY41283	Canola	nucleus, plastid	38.01	33.33
CDX86737	Canola	nucleus	38.26	33.26
CDX90811	Canola	nucleus	35.35	32.23
CDY51550	Canola	nucleus	35.11	31.94
CDX94136	Canola	nucleus, plastid	27.84	30.1
CDY04804	Canola	mitochondrion, plastid	11.62	30.0
CDY71640	Canola	nucleus, plastid	14.29	24.58
CDX75342	Canola	cytosol	0.24	0.45

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX68960	ProteinID:CDX68960	ProteinID:CDX68960.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00130706001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEF9E8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC01g04930D

Coordinates

chrLK031789:-:2218369..2221903

Molecular Weight (calculated)

45710.7 Da

IEP (calculated)

8.608

GRAVY (calculated)

-0.531

Length

413 amino acids

Sequence
(BLAST)

001: MDAGMNTSTH LKAQARCPLQ EHFLPRKSSK ENLDRFIPNR SAMDFDYAHY ALTEGRNGKD QAAAAVSSPS REAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPTDHSAS LHQQPRSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALGH TVYLWDASSG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGT MAWNNHILTT GGMDGQIVNN DVRIRSHVVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDPNLLAT
301: GGGGGDRTIK FWNTHTGACL NSVDTGSQNQ LTLWKYPSMV KMAELTGHTS RVLYMAQSPD GCTVATAAGD ETLRFWNVFG VPETAKKAAP KAAHEPFSHV
401: NRIQWITRRR FVH

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.