CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	65.45	37.31
CDY59111	Canola	nucleus	67.27	34.26
CDY71694	Canola	nucleus	44.55	28.32
GSMUA_AchrUn_...	Banana	cytosol	54.55	25.1
KRG94456	Soybean	cytosol	50.91	23.83
GSMUA_Achr1P27660_001	Banana	mitochondrion	33.64	22.98
GSMUA_Achr1P25940_001	Banana	cytosol	56.36	20.88
GSMUA_AchrUn_...	Banana	cytosol	54.55	19.67
CDY13491	Canola	cytosol	60.91	18.21
CDY59110	Canola	nucleus	67.27	17.66
CDY59109	Canola	nucleus	67.27	17.66
CDY52543	Canola	nucleus	67.27	17.29
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	64.55	16.59
KRH44738	Soybean	nucleus	66.36	16.52
CDX75343	Canola	nucleus	55.45	16.35
Solyc08g005420.2.1	Tomato	nucleus	66.36	16.29
PGSC0003DMT400047585	Potato	nucleus	65.45	16.07
AT5G27080.1	Thale cress	nucleus	64.55	16.06
AT5G27570.1	Thale cress	nucleus	65.45	16.0
CDY44519	Canola	cytosol, nucleus	75.45	15.99
AT5G26900.1	Thale cress	nucleus	64.55	15.99
KRH68047	Soybean	nucleus	66.36	15.97
GSMUA_Achr3P21370_001	Banana	cytosol	57.27	15.87
CDX68960	Canola	nucleus	56.36	15.01
GSMUA_AchrUn_...	Banana	nucleus	54.55	14.6
GSMUA_Achr1P28050_001	Banana	cytosol	53.64	14.5
GSMUA_AchrUn_...	Banana	cytosol	45.45	13.74
CDX94136	Canola	nucleus, plastid	42.73	12.3
CDX70523	Canola	plastid	51.82	12.18
CDX78541	Canola	plastid	51.82	12.18
CDY04804	Canola	mitochondrion, plastid	17.27	11.88
CDX90811	Canola	nucleus	47.27	11.48
CDY51550	Canola	nucleus	47.27	11.45
CDY10820	Canola	nucleus, plastid	48.18	11.28
CDY41283	Canola	nucleus, plastid	48.18	11.25
CDX86737	Canola	nucleus	48.18	11.16
CDX94473	Canola	nucleus	47.27	11.02
CDY71065	Canola	cytosol	10.0	10.68
GSMUA_Achr1P27670_001	Banana	cytosol	5.45	9.52
CDY46124	Canola	cytosol	50.91	9.03
GSMUA_AchrUn_...	Banana	cytosol	5.45	6.9
GSMUA_AchrUn_...	Banana	cytosol	14.55	5.59
CDX98239	Canola	nucleus	3.64	2.99
CDY71640	Canola	nucleus, plastid	0.91	0.42
CDX75342	Canola	cytosol	0.0	0.0
KRH07005	Soybean	nucleus	0.0	0.0
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078GNE5	EnsemblPlants:CDY26774	ProteinID:CDY26774	ProteinID:CDY26774.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00035707001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EE7FA6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaC09g09010DBnaC09g09010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNE5]

Coordinates

chrLK032194:+:136322..136933

Molecular Weight (calculated)

11674.4 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.600

Length

110 amino acids

Sequence
(BLAST)

001: MASYKGHCQE VCGLKWSGSG QRRASGGNDS LVHIWDRSSS TQHTSAAKAL AWCPFQSNLL ASGGGEEDRK IKFWNTQTGA CLNSVDTGSS QSQAAGDETL
101: SLQGKPLIDN

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.