Factsheet for PGSC0003DMT400069533

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072830.2.1	Tomato	nucleus, plastid	98.02	98.02
PGSC0003DMT400001467	Potato	nucleus	90.55	90.95
VIT_15s0107g00320.t01	Wine grape	nucleus	85.49	86.44
KRH77717	Soybean	nucleus	81.32	81.32
KRH27762	Soybean	nucleus	80.22	80.22
OQU82251	Sorghum	cytosol	29.23	76.0
TraesCS5A01G272600.1	Wheat	plastid	75.38	73.45
TraesCS5D01G280600.1	Wheat	plastid	75.38	73.29
TraesCS6B01G296200.1	Wheat	plastid	76.26	73.21
TraesCS5B01G272800.1	Wheat	plastid	75.16	73.08
Os02t0700100-01	Rice	extracellular	75.16	72.92
TraesCS6A01G268900.1	Wheat	plastid	75.82	72.78
TraesCS6D01G246000.1	Wheat	plastid	75.82	72.63
KXG30937	Sorghum	nucleus	75.16	72.61
EES06634	Sorghum	nucleus	74.29	71.16
PGSC0003DMT400047585	Potato	nucleus	69.89	70.98
Zm00001d000168_P001	Maize	plastid	74.29	70.86
Zm00001d016034_P002	Maize	nucleus	73.19	70.7
Os04t0599800-01	Rice	nucleus	75.16	67.86
TraesCS2D01G438800.1	Wheat	nucleus	70.99	66.32
TraesCS2B01G461400.1	Wheat	nucleus	70.99	66.05
TraesCS2A01G440000.2	Wheat	nucleus	69.45	64.49
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	66.59	63.66
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	66.37	63.45
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	66.37	63.45
TraesCS6A01G085400.1	Wheat	nucleus	52.53	62.57
KXG27036	Sorghum	cytosol	24.84	62.43
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	64.84	62.11
Os09t0242300-00	Rice	plastid	62.42	59.41
HORVU5Hr1G041780.3	Barley	plastid	65.71	55.27
HORVU6Hr1G068080.3	Barley	plastid	64.4	54.97
Zm00001d017725_P001	Maize	mitochondrion	32.53	47.28
Zm00001d005562_P001	Maize	plastid	20.88	45.89
PGSC0003DMT400013474	Potato	cytosol	42.64	40.76
PGSC0003DMT400058525	Potato	nucleus, plastid	41.1	39.12
PGSC0003DMT400027994	Potato	nucleus, plastid	41.1	38.48
PGSC0003DMT400076326	Potato	nucleus, plastid	41.76	37.85
TraesCS2D01G118700.1	Wheat	cytosol	15.6	33.81
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	9.89	30.82
Zm00001d006622_P001	Maize	golgi	16.48	22.19
TraesCS2D01G438900.1	Wheat	mitochondrion	1.1	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	1.1	1.22

Protein Annotations

EntrezGene:102581964	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CKM2	PFAM:PF00400	PFAM:PF12894	EnsemblPlantsGene:PGSC0003DMG401027032
PGSC:PGSC0003DMG401027032	EnsemblPlants:PGSC0003DMT400069533	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295C230	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006347329.1	RefSeq:XP_006347330.1	SEG:seg

Description

Cell division control 20 [Source:PGSC_GENE;Acc:PGSC0003DMG401027032]

Coordinates

chr6:+:53514087..53517837

Molecular Weight (calculated)

50426.1 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.557

Length

455 amino acids

Sequence
(BLAST)

001: MDAGSLSSVS ASKTKSRCPL QEQYLQKRNS RENLDRFIPN RSAMDMDYAH YMLTEGRKGK ENPAVDSPSR EAYRKQLAET FNMNRTRILA FKNKPPTSVE
101: AIPNDFSSSV HQQAKTAKPR RYIPQTSERT LDAPDLVDDY YLNLLDWGSS NVLSIALGST VYLWDASDGA TSELVTVDEE HGPVTSVKWA PDGRHIALGL
201: NNSDVQLWDT TANRLLRTMR GGHRSRVGAL DWNNHVLTTG GMDGQIINND VRVRSPIVDT YQGHHQEVCG LKWSASGQQL ASGGNDNLLH IWDRSMASSN
301: TSTEWLHRLE DHTAAVKALA WCPFQSNLLA SGGGGGDRSI KFWNTHTGAC LNSIDTGSQV CALLWNKNER ELLSSHGFTK NQLTLWKYPS MVKTAELTGH
401: TSRVLFMAQS PDGCTVASAA GDETLRFWNV FGTPEVAKPA PKANPEPFAH LNRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.