Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G268900.1 | Wheat | plastid | 70.68 | 56.96 |
| TraesCS5A01G272600.1 | Wheat | plastid | 69.63 | 56.96 |
| TraesCS2A01G440000.2 | Wheat | nucleus | 72.25 | 56.33 |
| Bra037011.1-P | Field mustard | nucleus | 59.95 | 54.65 |
| Os04t0599800-01 | Rice | nucleus | 71.99 | 54.56 |
| Solyc03g096870.2.1 | Tomato | nucleus | 62.3 | 52.54 |
| PGSC0003DMT400069533 | Potato | nucleus, plastid | 62.57 | 52.53 |
| PGSC0003DMT400001467 | Potato | nucleus | 61.78 | 52.1 |
| Solyc06g072830.2.1 | Tomato | nucleus, plastid | 61.78 | 51.87 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 60.99 | 51.78 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 54.45 | 50.36 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 54.45 | 50.36 |
| AT4G33260.1 | Thale cress | nucleus | 58.9 | 50.34 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 54.19 | 50.12 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 54.45 | 50.12 |
| TraesCS5A01G197800.2 | Wheat | mitochondrion, plastid | 62.3 | 50.0 |
| AT4G33270.1 | Thale cress | nucleus | 59.42 | 49.67 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 58.12 | 49.22 |
| AT5G27080.1 | Thale cress | nucleus | 56.02 | 48.42 |
| AT5G26900.1 | Thale cress | nucleus | 56.02 | 48.2 |
| Bra005544.1-P | Field mustard | nucleus | 54.71 | 47.61 |
| AT5G27570.1 | Thale cress | nucleus | 55.76 | 47.33 |
| VIT_16s0039g02620.t01 | Wine grape | cytosol | 28.27 | 46.55 |
| Solyc08g005420.2.1 | Tomato | nucleus | 54.45 | 46.43 |
| PGSC0003DMT400047585 | Potato | nucleus | 54.45 | 46.43 |
| KRH08491 | Soybean | cytosol | 17.02 | 46.43 |
| Bra034555.1-P | Field mustard | nucleus | 45.29 | 45.65 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 49.48 | 44.16 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 41.88 | 37.38 |
| CDX98239 | Canola | nucleus | 12.04 | 34.33 |
| Bra011430.1-P | Field mustard | cytosol | 61.26 | 32.73 |
| TraesCS3A01G527600.1 | Wheat | plastid | 35.6 | 27.93 |
| GSMUA_Achr2P19120_001 | Banana | cytosol | 15.18 | 21.72 |
Protein Annotations
| MapMan:13.3.4.1.4 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 | EnsemblPlantsGene:TraesCS6A01G085400 |
| EnsemblPlants:TraesCS6A01G085400.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | SEG:seg |
Description
No Description!
Coordinates
chr6A:-:53505015..53506464
Molecular Weight (calculated)
41737.1 Da
IEP (calculated)
6.892
GRAVY (calculated)
-0.383
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLTDMTSPE RSSGGCASSW PPLQEAGSSP YMSSLCSPSG IPAVKRYGDR FIPNRSAMDM DMTHYLLTEP RKDKENAATP SPAREAYRRL LPKKLFNNHT
101: RILAFQNRLP EPANNFLAEL RADAASIQDK PAKQRRYIPQ SPERMLDAPG LVDDYCLNLL DWGSANVLSI ALGNTVYLWD ASSGSTSELV TVDEDDGPVT
201: SVSWAPDGRH IAIGLDSSAV QLWDSTSNRL RRMLQGVHES RVGSLAWNNN ILTAGDMDGK IVNNDMRIRN HAVQTYHGHH QEVCGLTWSG SGKRLASGGN
301: DSLLHIWDVS MASSAQSTGR TQWLHRLDDN LAAVKGLAWC PFQSNLLASG GGVGDRCIKF WNTHIGACLN SVDTGSQVCA LL
101: RILAFQNRLP EPANNFLAEL RADAASIQDK PAKQRRYIPQ SPERMLDAPG LVDDYCLNLL DWGSANVLSI ALGNTVYLWD ASSGSTSELV TVDEDDGPVT
201: SVSWAPDGRH IAIGLDSSAV QLWDSTSNRL RRMLQGVHES RVGSLAWNNN ILTAGDMDGK IVNNDMRIRN HAVQTYHGHH QEVCGLTWSG SGKRLASGGN
301: DSLLHIWDVS MASSAQSTGR TQWLHRLDDN LAAVKGLAWC PFQSNLLASG GGVGDRCIKF WNTHIGACLN SVDTGSQVCA LL
001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
Arabidopsis Description
CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.