CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	KRH39114	AT1G18040.1	20706207
AT1G23190.1	KRH41782	AT1G18040.1	20706207
AT1G23190.1	KRH48600	AT1G18040.1	20706207
AT1G23190.1	KRH60482	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60387	Soybean	endoplasmic reticulum	98.45	98.45
Bra016357.1-P	Field mustard	plastid	85.57	85.42
CDY41458	Canola	plastid	85.4	85.25
AT1G23190.1	Thale cress	plastid	85.05	84.91
Solyc04g045340.2.1	Tomato	plastid	84.88	84.73
GSMUA_Achr8P30900_001	Banana	cytosol	83.85	83.7
KRH65519	Soybean	cytosol	36.43	83.46
Os03t0712700-01	Rice	plasma membrane	83.16	83.16
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	86.94	81.48
CDX91702	Canola	plastid	85.57	81.11
GSMUA_Achr2P06680_001	Banana	cytosol	80.07	80.76
Bra024568.1-P	Field mustard	plastid	78.01	77.87
CDX91703	Canola	endoplasmic reticulum	21.48	76.69
CDY04740	Canola	plastid	76.8	76.67
Zm00001d013428_P002	Maize	plasma membrane	83.51	74.77
Zm00001d033746_P003	Maize	plastid	82.99	74.54
AT1G70730.3	Thale cress	plastid	84.54	74.32
EER93574	Sorghum	plastid	82.65	74.11
CDY21421	Canola	plastid	85.22	73.59
HORVU4Hr1G007620.2	Barley	plasma membrane	81.1	72.5
TraesCS4B01G047300.1	Wheat	plastid	80.58	72.38
TraesCS4A01G267000.1	Wheat	plastid	80.76	72.09
TraesCS4D01G047300.1	Wheat	plastid	79.73	71.38
Zm00001d036664_P001	Maize	cytosol, mitochondrion	73.37	68.98
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	18.04	65.22
Zm00001d036666_P001	Maize	mitochondrion	66.84	64.94
KRH35404	Soybean	nucleus	57.9	53.66
KRG91417	Soybean	nucleus	57.04	52.87

Protein Annotations

KEGG:00520+5.4.2.10	EntrezGene:100780166	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C
InterPro:A-D-PHexomutase_CS	InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III
EMBL:ACUP02004777	InterPro:Alpha-D-phosphohexomutase_SF	EnsemblPlantsGene:GLYMA_08G044100	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004614	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0005978	GO:GO:0006006	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009590
GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010319	GO:GO:0016868	GO:GO:0019252
GO:GO:0019388	GO:GO:0046872	GO:GO:0071704	UniProt:I1KQ93	EnsemblPlants:KRH41685	ProteinID:KRH41685
ProteinID:KRH41685.1	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879	PFAM:PF02880	PRINTS:PR00509
ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749	SUPFAM:SSF53738	SUPFAM:SSF55957
UniParc:UPI0002338DE6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3485948..3492782

Molecular Weight (calculated)

63394.0 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.186

Length

582 amino acids

Sequence
(BLAST)

001: MVLFNVSRVE TTPFDGQKPG TSGLRKKVKV FVQPHYLHNF VQSTFNALTV EKVRGATLVV SGDGRYFSKE AIQIITKMSA ANGVRRVWIG QNGLLSTPAV
101: SAVIREKLGA DGSRATGAFI LTASHNPGGP NEDFGIKYNM ENGGPAPEGI TDKIYENTTT INEYLIASDL PDVDITSTGV TSFTGPGGPF DVEVFDSASD
201: YIKLMKSIFD FESIRKLLSS PKFTFCYDAL HGVGGAYAKS IFVDELGAQE SSLLNCTPKE DFGGGHPDPN LTYAKELVAR MGLGKSEPQE EPPEFGAASD
301: GDADRNMVLG KRFFVTPSDS VAIIAANAVE AIPYFSAGLK GVARSMPTSA ALDVVAKHLN LKFFEVPTGW KFFGNLMDAG LCSVCGEESF GTGSDHIREK
401: DGIWAVLAWL SILAYKNKDK LEDKLVTVED IVRQHWATYG RHYYTRYDYE NVDAGAAKEL MAYLVKLQSS LSEVNQIVKG IRSDVSNVVH GDEFEYNDPV
501: DGSISSHQGI RYLFEDGSRL IFRLSGTGSE GATIRLYIEQ YEKDPSKIGR LSNEALAPLV EVALKLSKME EFTGRSAPTV IT

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.