Factsheet for VIT_08s0032g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055068	Potato	mitochondrion	69.33	67.97
KRH68026	Soybean	mitochondrion	55.6	67.59
Solyc01g006890.2.1	Tomato	mitochondrion	68.53	67.19
KRH72142	Soybean	mitochondrion	67.2	65.54
KRH32877	Soybean	mitochondrion	67.07	65.41
AT3G11760.1	Thale cress	nucleus	61.07	65.24
CDY71046	Canola	cytosol	50.4	65.17
Bra038679.1-P	Field mustard	cytosol	60.27	64.94
KRG96284	Soybean	mitochondrion	65.33	64.9
CDY47916	Canola	mitochondrion, nucleus	60.0	64.75
GSMUA_Achr5P02610_001	Banana	mitochondrion	57.33	60.73
GSMUA_Achr2P12860_001	Banana	mitochondrion	58.27	60.36
GSMUA_Achr6P31090_001	Banana	mitochondrion	56.4	59.33
Zm00001d021933_P001	Maize	cytosol	26.27	54.42
KXG37933	Sorghum	mitochondrion	55.87	54.42
Zm00001d033510_P001	Maize	mitochondrion	55.2	54.19
Os03t0649000-01	Rice	mitochondrion	56.13	53.7
TraesCS5B01G026400.1	Wheat	mitochondrion	52.67	53.52
TraesCS5D01G381300.1	Wheat	mitochondrion	52.4	53.18
TraesCS5A01G371800.1	Wheat	mitochondrion	52.4	53.04
TraesCS5D01G035100.1	Wheat	mitochondrion	52.53	52.96
TraesCS5A01G027200.1	Wheat	mitochondrion	52.67	52.95
GSMUA_Achr4P31330_001	Banana	mitochondrion	59.47	52.91
TraesCS5B01G373900.1	Wheat	mitochondrion	52.13	52.77
Os12t0620600-01	Rice	mitochondrion	52.53	52.32
HORVU5Hr1G092510.5	Barley	mitochondrion	52.0	50.65
KXG24034	Sorghum	mitochondrion	52.67	50.58
HORVU5Hr1G007680.4	Barley	mitochondrion	52.0	50.45
Zm00001d041287_P001	Maize	mitochondrion	52.13	50.19
GSMUA_Achr8P04760_001	Banana	mitochondrion	50.4	48.65
VIT_13s0019g03570.t01	Wine grape	cytosol	25.07	46.08
Zm00001d032528_P001	Maize	plastid	24.27	40.44
VIT_04s0008g05510.t01	Wine grape	nucleus	29.07	36.58
GSMUA_Achr8P26590_001	Banana	mitochondrion	53.87	34.71

Protein Annotations

EntrezGene:100254761	wikigene:100254761	MapMan:35.2	EMBL:AM453967	ProteinID:CAN65471	ProteinID:CAN65471.1
ProteinID:CCB61563	ProteinID:CCB61563.1	UniProt:F6I3Q3	EMBL:FN596742	InterPro:IPR019448	EntrezGene:LOC100254761
wikigene:LOC100254761	InterPro:NT-C2	PFAM:PF10358	PFscan:PS51840	PANTHER:PTHR31182	PANTHER:PTHR31182:SF2
TIGR:TC67996	UniParc:UPI000210A865	ArrayExpress:VIT_08s0032g01040	EnsemblPlantsGene:VIT_08s0032g01040	EnsemblPlants:VIT_08s0032g01040.t01	unigene:Vvi.9714
RefSeq:XP_002270072	RefSeq:XP_002270072.1	RefSeq:XP_003632562	RefSeq:XP_003632562.1	RefSeq:XP_003632563	RefSeq:XP_003632563.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:5188178..5192617

Molecular Weight (calculated)

84053.1 Da

IEP (calculated)

4.621

GRAVY (calculated)

-0.561

Length

750 amino acids

Sequence
(BLAST)

001: MVVKMMRWRP WPPLIPRKYE VKLVVRRMEG WGCAGEEGAE GRRVVVEIRW KGPKISLSSL RRTVKRNFTK EEDVGQDGVV LWDEEFQSVC NLSAYKDNVF
101: HPWEIAFTVL NGSHQGPKNK VPVVGTASLN IAEFASAAEE KEFELNIPLT LPGGAAEPHP LLCISLSLLE LRTAQEPTDS VQRAIVPVPS SPRPGETAST
201: EKDELSAIKA GLRKVKIFTE YVSTRRAKKA CREEEGSEGR CSARSEDGDY TYPFDSDSLD DFEEGETDEG KEDSSVRKSF SYGTLAYANC AGGSFYSNTR
301: INGGDEDWVY YSNRKSDVGC SQIDDSNAAV SELQSSKRSI LSWRKRKLSF RSPKARGEPL LKKAYGEDGG DDIDFDRRQL SSDESLPFGW HKTDEDSSAN
401: RSSVSEFGDD NFAIGNWEQK EVVSRDGHMK VQTQVFFASI DQRSERAAGE SACTALVAVI ANWFQTNRDI MPIKSQFDSL IREGSLEWRN LCDNETYREG
501: FPDKHFDLDT VLEAKIRPLS VVPGKSFIGF FHPDGMDEGR FDFLQGAMSF DSIWDEISHA GSESPSNSGP QVYIVSWNDH FFVLIVEPEA YYIIDTLGER
601: LYEGCDQAYI LKFGRDTKLY KLSSVPQPSD EKPVNPQESS VAGPVVTKPE ESTADEEEAE VVCQGKESCK EYIKNFLAAI PIRELQADIK KGLMASTPLH
701: RRLQIEFHYT QLLQPAQPET EDNQLLQPAQ LVTEVTPDTP QIVEVAIAET

Best Arabidopsis Sequence Match ( AT3G11760.1 )
(BLAST)

001: MVVKMMKWRP WPPLVTRKYE VKLSVKKLEG WDLVREGVPE KDRLTVEIRW KGPKATLGSL RRSVKRNFTK EAVGESDVVS WEDEEFQSLC SLTSYKDSLF
101: YPWEITFSVF TNGMKQGQKN KAPVVGTAFL NLAEYACVTD KKEFDINIPL TLSACVASET HPLLFVSLSL LELRTTPETS DSAAQTAVVP LPLPSPSPQQ
201: PTETHSVEKE DVSAIKAGLR KVKIFTEFVS TRKAKKACRE EEGRFSSFES SESLDDFETD FDEGKEELMS MRKSFSYGPL SYANGVGTSL NCGAKVSDED
301: EDWVYYSHRK SDVGAGCSDA EDSAAGLVYE ASLLPRRSIL PWRKRKLSFR SPKSKGEPLL KKDNGEEGGD DIDFDRRQLS SDEAHPPFGS KIDEDSSANP
401: RTSFSEFGED SFAIGSWEEK EVISRDGHMK LQTSVFLASI DQRSERAAGE SACTALVAVI ADWFQKNGNL MPIKSQFDSL IREGSLEWRN LCENETYMQK
501: FPDKHFDLDT VLQAKIRPLT VIPGKSFVGF FHPDGMINEG RFEFLQGAMS FDSIWAEIIS LEESSANGDS YDDDSPPHVY IVSWNDHFFV LKVEKEAYYI
601: IDTLGERLYE GCDQAYVLKF DHKTVIHKIL HTEEAGSESE PESEILSRGK ESCKEYIKNF LAAIPIRELQ EDIKKGLAST APVHHRLQIE FHYTTNAEIT
701: SL

Arabidopsis Description

F26K24.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.