Factsheet for PGSC0003DMT400055068

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006890.2.1	Tomato	mitochondrion	95.42	95.42
VIT_08s0032g01040.t01	Wine grape	mitochondrion, nucleus	67.97	69.33
KRH68026	Soybean	mitochondrion	51.63	64.02
KRH32877	Soybean	mitochondrion	64.31	63.98
KRH72142	Soybean	mitochondrion	64.05	63.72
CDY71046	Canola	cytosol	46.93	61.9
PGSC0003DMT400005067	Potato	cytosol	21.83	60.95
KRG96284	Soybean	mitochondrion	60.13	60.93
Bra038679.1-P	Field mustard	cytosol	54.64	60.06
CDY47916	Canola	mitochondrion, nucleus	54.25	59.71
AT3G11760.1	Thale cress	nucleus	54.64	59.54
PGSC0003DMT400036595	Potato	nucleus, plastid	27.32	59.38
GSMUA_Achr5P02610_001	Banana	mitochondrion	53.07	57.34
GSMUA_Achr2P12860_001	Banana	mitochondrion	54.12	57.18
GSMUA_Achr6P31090_001	Banana	mitochondrion	52.29	56.1
PGSC0003DMT400065418	Potato	extracellular, golgi	51.24	51.31
Zm00001d033510_P001	Maize	mitochondrion	50.98	51.05
KXG37933	Sorghum	mitochondrion	51.37	51.04
TraesCS5B01G026400.1	Wheat	mitochondrion	48.89	50.68
TraesCS5A01G371800.1	Wheat	mitochondrion	48.89	50.47
TraesCS5D01G381300.1	Wheat	mitochondrion	48.63	50.34
TraesCS5B01G373900.1	Wheat	mitochondrion	48.76	50.34
TraesCS5A01G027200.1	Wheat	mitochondrion	49.02	50.27
TraesCS5D01G035100.1	Wheat	mitochondrion	48.63	50.0
Zm00001d021933_P001	Maize	cytosol	23.66	50.0
Os12t0620600-01	Rice	mitochondrion	48.89	49.67
GSMUA_Achr4P31330_001	Banana	mitochondrion	54.64	49.58
Os03t0649000-01	Rice	mitochondrion	50.33	49.11
HORVU5Hr1G007680.4	Barley	mitochondrion	48.89	48.38
HORVU5Hr1G092510.5	Barley	mitochondrion	48.24	47.92
KXG24034	Sorghum	mitochondrion	48.76	47.76
Zm00001d041287_P001	Maize	mitochondrion	47.19	46.34
GSMUA_Achr8P04760_001	Banana	mitochondrion	46.27	45.56
PGSC0003DMT400082714	Potato	nucleus	27.58	36.7
Zm00001d032528_P001	Maize	plastid	21.57	36.67
GSMUA_Achr8P26590_001	Banana	mitochondrion	50.46	33.16
PGSC0003DMT400056835	Potato	cytosol, nucleus	16.34	30.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400055068	EnsemblPlantsGene:PGSC0003DMG400021369	EntrezGene:102598948	InterPro:IPR019448	InterPro:NT-C2	ncoils:Coil
PANTHER:PTHR31182	PANTHER:PTHR31182:SF2	PFAM:PF10358	PFscan:PS51840	PGSC:PGSC0003DMG400021369	RefSeq:XP_006348445.1
SEG:seg	UniParc:UPI0002952CD4	UniProt:M1BXA9	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021369]

Coordinates

chr1:+:2749603..2754805

Molecular Weight (calculated)

85764.8 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.480

Length

765 amino acids

Sequence
(BLAST)

001: MVVKMMKWRP WPPLISKKFE VKIFVGKVEN LVCEVASSGG VAVEIRWKGP PKIALSSFIK TVKRNCTREE MVKNGPNGGV LVEWDEEFQS LCNLSGYKDN
101: VFHPWEIAFT VLNGMNGKNK APIVGSAVLN VAEFAAKIEE REFKLNIPLV VPGGASDTRP MLCISLSLFE LRATQESTEL VQRPLAPVQS PARSVETPPV
201: EKDELSALKA GLRKVKIFTE YVSTRRAKKA CREEEGSEER SSARSEEGEY AYPFDSESND EYEEGESDEA KEDPTVRKSF SYGPLAYANC AGVSFHSSTR
301: VNGEGEDWVY FSNRRSDVGC SQMDDQVTCA SDLVVLQNSK RSILPWRKRK LSFRSPKSKG EPLLKKDNGE EGGDDIDFDR RQLSSDEALS FGLYKVEEDS
401: TANRSSVSEF GDDNFAVGCW EQKEIVSRDG HMKLQTQVFF ASIDQRSEQA AGESACTALV AVVADWLQNN RDLMPIKSQF DSLIREGSLE WRKLCENETY
501: RERFPDKHFD LETVLQAKIR SISVVPGNSF VGFFHPDGMD EGGFDFLHGA MSFDNIWDEI SRAGLQYASV REPQIYIVSW NDHFFVLKVE AEAYYIIDTL
601: GERLYEGCNQ AYILKFDKET TIYKQPDTTQ STEEKPAVDQ QTISTTAETK LSDGPHTNAT HGSLESEAVN ETDEPSKAES VEEIICQGKE SCKDYIKSFL
701: AAIPIRELQA DIKKGLKTST PLHQRLQIEL HFTHLQQQPL ITTPAIEIAT AAQELPAVAM TEISV

Best Arabidopsis Sequence Match ( AT3G11760.1 )
(BLAST)

001: MVVKMMKWRP WPPLVTRKYE VKLSVKKLEG WDLVREGVPE KDRLTVEIRW KGPKATLGSL RRSVKRNFTK EAVGESDVVS WEDEEFQSLC SLTSYKDSLF
101: YPWEITFSVF TNGMKQGQKN KAPVVGTAFL NLAEYACVTD KKEFDINIPL TLSACVASET HPLLFVSLSL LELRTTPETS DSAAQTAVVP LPLPSPSPQQ
201: PTETHSVEKE DVSAIKAGLR KVKIFTEFVS TRKAKKACRE EEGRFSSFES SESLDDFETD FDEGKEELMS MRKSFSYGPL SYANGVGTSL NCGAKVSDED
301: EDWVYYSHRK SDVGAGCSDA EDSAAGLVYE ASLLPRRSIL PWRKRKLSFR SPKSKGEPLL KKDNGEEGGD DIDFDRRQLS SDEAHPPFGS KIDEDSSANP
401: RTSFSEFGED SFAIGSWEEK EVISRDGHMK LQTSVFLASI DQRSERAAGE SACTALVAVI ADWFQKNGNL MPIKSQFDSL IREGSLEWRN LCENETYMQK
501: FPDKHFDLDT VLQAKIRPLT VIPGKSFVGF FHPDGMINEG RFEFLQGAMS FDSIWAEIIS LEESSANGDS YDDDSPPHVY IVSWNDHFFV LKVEKEAYYI
601: IDTLGERLYE GCDQAYVLKF DHKTVIHKIL HTEEAGSESE PESEILSRGK ESCKEYIKNF LAAIPIRELQ EDIKKGLAST APVHHRLQIE FHYTTNAEIT
701: SL

Arabidopsis Description

F26K24.5 protein [Source:UniProtKB/TrEMBL;Acc:Q9SF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.